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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2390666/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>0.505953785839268</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0657883286476135</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.06440769135952</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[6.33199977874756 30.2889995574951 203.425003051758 367.385009765625]</tissue_mn>
- <tissue_mnr>[0.0172353237867355 0.0824448466300964 0.553710699081421 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.592606138745 40.1038232184177 43.8988882669279 30.9243350360023]</tissue_std>
- <tissue_stdr>[0.00995035655796528 0.111074611544609 0.121585711836815 0.0856503993272781]</tissue_stdr>
- <contrast>125.833076477051</contrast>
- <contrastr>0.342510104179382</contrastr>
- <res_ECR>0.420792520046234</res_ECR>
- <NCR>0.117662355303764</NCR>
- <ICR>0.393242925405502</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>3.04485964775085</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.94568157196045</contrastr>
- <NCR>2.0201313495636</NCR>
- <ICR>1.43512630462646</ICR>
- <SurfaceEulerNumber>2.22448979591837</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12648844645982</SurfaceDefectArea>
- <SurfaceDefectNumber>1.75</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.31576657295227</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.28815388679504</SurfacePositionRMSE>
- <SIQR>2.69318272015113</SIQR>
- <IQR>2.15056179058106</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-010137</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>0.505953785839268</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0657883286476135</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.06440769135952</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>26</EC_abs>
- <defect_size>0.505953785839268</defect_size>
- <vol_abs_CGW>[237.153745098039 766.320345098039 579.519854901961 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.17501568627451</vol_abs_WMH>
- <vol_rel_WMH>0.000742274277114647</vol_rel_WMH>
- <surf_TSA>2153.80387363713</surf_TSA>
- <vol_TIV>1582.99394509804</vol_TIV>
- <vol_rel_CGW>[0.149813425270778 0.484095563012769 0.366091011716453 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.53735713592952 0.621279524999642]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53341698646545 0.736273876231692 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.91058482494217 0.24613185306488 0.294788339001715;2.54858044724309 0.178708415075515 0.427738172391445;3.20261621233403 0.266792541891538 0.27747348860684]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.932877193801351 0.32038983822069 0.50251572327044;4.18569247365665 0.382635652803298 0.49748427672956]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.75749689947757</vol_TIV>
- <vol_rel_CGW>[0.540470999834376 6.54410134721208 4.42476673341331 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.07422742771146</vol_rel_WMH>
- <surf_TSA>8.62378439997382</surf_TSA>
- <SQR>5.38021829742124</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.399724522639427]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00192814716137946 0.00172662525437772 0.0396836660802364]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[950.586054901961 493.444301960784 410.69431372549 472.797125490196 1121.68583921569 8369.11211372549]</SPMvols0>
- <SPMvols1>[827.259219607843 464.411584313725 220.803882352941 376.1058 812.242717647059 8441.14364313725]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[48.0699996948242 230.225799560547 380.758087158203]</T3th>
- <Tth>
- <T3th>[-56.9093284606934 -56.9093284606934 -4.41966438293457 48.0699996948242 230.225799560547 380.758087158203 547.102111816406 815.437133789062]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0199944525957108 0.0680501386523247 0.0743136405944824 0 0]</dtc>
- <ll>[0.0815840007878151 0 0.0815840007878151 0;0.195317409190239 0.00924849138111055 0.204565900571349 1972.22229003906;0.195317409190239 0.00924849138111055 0.204565900571349 1972.22229003906]</ll>
- <rmsdtc>[0.0445598661899567 0.0880204513669014 0.0978223979473114]</rmsdtc>
- <rmsgdt>[0.0321302078664303 0.0427372083067894 0.0531067997217178]</rmsgdt>
- <rmsdt>0.0978223979473114</rmsdt>
- <dt>0.0743136405944824</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00848830584436655 0.030250646173954 0.0416920743882656 0.0491712465882301 0.0554173402488232 0.0610331185162067]</dtc>
- <ll>[0.0823228177912766 0 0.0823228177912766 0;0.216875412087912 0.0121095180860806 0.228984930173993 6198.5595703125;0.199220964427438 0.0150777080580496 0.214298672485487 10851.607421875;0.179406407891515 0.0178094503433503 0.197215858234866 19203.431640625;0.162323691959256 0.0211356601376337 0.18345935209689 36973.73046875;0.162323691959256 0.0211356601376337 0.18345935209689 36973.73046875]</ll>
- <rmsdtc>[0.00982141122221947 0.0344324111938477 0.049972765147686 0.070252388715744 0.0916761755943298 0.0987296551465988]</rmsdtc>
- <rmsgdt>[0.00314153311774135 0.0117025217041373 0.0252559464424849 0.0440801195800304 0.0617082267999649 0.0676167905330658]</rmsgdt>
- <rmsdt>0.0987296551465988</rmsdt>
- <dt>0.0610331185162067</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025930/ses-1/sub-0025930_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 28s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>28s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 7s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 55s</item>
- <item>SPM preprocessing 1 (estimate 2): 48s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 14s</item>
- <item>Update Segmentation 16s</item>
- <item>Update Skull-Stripping 32s</item>
- <item>Update probability maps 8s</item>
- <item>69s</item>
- <item>Global intensity correction: 12s</item>
- <item>SANLM denoising after intensity normalization (medium): 21s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 11s</item>
- <item>Estimate local tissue thresholds (WM) 14s</item>
- <item>Estimate local tissue thresholds (GM) 21s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 30s</item>
- <item>83s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 11s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 17s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>52s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>9s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0823 0.0000 0.0823 | 32.0000</item>
- <item>2 | 2.50 | 0.0799 0.0011 0.0810 | 29.4886</item>
- <item>3 | 2.50 | 0.0792 0.0017 0.0809 | 26.9772</item>
- <item>4 | 2.50 | 0.0789 0.0019 0.0808 | 24.6107</item>
- <item>5 | 2.50 | 0.0786 0.0020 0.0806 | 22.6548</item>
- <item>6 | 2.50 | 0.0784 0.0021 0.0804 | 20.6989</item>
- <item>7 | 2.50 | 0.0781 0.0022 0.0803 | 18.9688</item>
- <item>8 | 2.50 | 0.0778 0.0023 0.0801 | 17.4455</item>
- <item>9 | 2.50 | 0.0776 0.0023 0.0799 | 15.9223</item>
- <item>10 | 2.50 | 0.0773 0.0024 0.0797 | 14.6627</item>
- <item>11 | 2.50 | 0.0770 0.0025 0.0795 | 13.4764</item>
- <item>12 | 2.50 | 0.0768 0.0025 0.0793 | 12.3015</item>
- <item>13 | 2.50 | 0.0764 0.0026 0.0791 | 11.3776</item>
- <item>14 | 2.50 | 0.0762 0.0026 0.0788 | 10.4537</item>
- <item>15 | 2.25 | 0.0750 0.0027 0.0777 | 9.5920</item>
- <item>16 | 2.25 | 0.0723 0.0040 0.0763 | 8.8725</item>
- <item>29 | 2.00 | 0.0739 0.0018 0.0758 | 3.3283</item>
- <item>30 | 2.00 | 0.0683 0.0041 0.0724 | 3.1221</item>
- <item>31 | 2.00 | 0.0664 0.0050 0.0714 | 2.9160</item>
- <item>43 | 1.75 | 0.0656 0.0029 0.0684 | 1.5785</item>
- <item>44 | 1.75 | 0.0613 0.0051 0.0664 | 1.5194</item>
- <item>45 | 1.75 | 0.0598 0.0059 0.0657 | 1.4626</item>
- <item>57 | 1.50 | 0.0584 0.0043 0.0627 | 1.0900</item>
- <item>58 | 1.50 | 0.0552 0.0064 0.0615 | 1.0730</item>
- <item>59 | 1.50 | 0.0541 0.0070 0.0612 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 136s</item>
- <item>Prepare output 8s</item>
- <item>144s</item>
- <item>Jacobian determinant (RMS): 0.010 0.034 0.050 0.070 0.092 | 0.098730</item>
- <item>Template Matching: 0.082 0.217 0.199 0.179 0.162 | 0.162324</item>
- <item>Write result maps: 44s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 36s</item>
- <item>78s</item>
- <item>Create initial surface 67s</item>
- <item>Topology correction: 80s</item>
- <item>Surface refinement: 88s</item>
- <item>Reduction of surface collisions with optimization: 57s</item>
- <item>Spherical mapping with areal smoothing 69s</item>
- <item>Spherical registration 219s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 21s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 35s</item>
- <item>74s</item>
- <item>Create initial surface 65s</item>
- <item>Topology correction: 81s</item>
- <item>Surface refinement: 63s</item>
- <item>Reduction of surface collisions with optimization: 62s</item>
- <item>Spherical mapping with areal smoothing 78s</item>
- <item>Spherical registration 245s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5373 0.6213 mm</item>
- <item>Surface intensity / position RMSE: 0.0658 / 0.0644</item>
- <item>Euler number / defect number / defect size: 26.0 / 15.0 / 0.51%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/surf/lh.thickness.sub-0025930_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/surf/rh.thickness.sub-0025930_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/sub-0025930_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 1413s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 19s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 70s</item>
- <item>ROI estimation of 'lpba40' atlas 21s</item>
- <item>ROI estimation of 'hammers' atlas 52s</item>
- <item>ROI estimation of 'thalamus' atlas 4s</item>
- <item>ROI estimation of 'ibsr' atlas 19s</item>
- <item>ROI estimation of 'aal3' atlas 31s</item>
- <item>ROI estimation of 'mori' atlas 46s</item>
- <item>ROI estimation of 'anatomy3' atlas 60s</item>
- <item>ROI estimation of 'julichbrain' atlas 79s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 30s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 55s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 100s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 109s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>705s</item>
- <item>Quality check: 9s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/report/catreport_sub-0025930_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 47 minute(s) and 42 second(s).</item>
- <item>Image Quality Rating (IQR): 83.49% (B)</item>
- <item>GM volume (GMV): 48.41% (766.32 / 1582.99 ml)</item>
- <item>GM thickness (GMT): 2.54 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2390666/ds/BNU_2/sub-0025930/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|