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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
- <cleanupstr>0.5</cleanupstr>
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- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_1955925/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
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- <ON>11</ON>
- <MB>13</MB>
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- <NV>17</NV>
- <HC>19</HC>
- <HD>21</HD>
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- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>0.669796054040727</SurfaceDefectArea>
- <SurfaceDefectNumber>14.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0661882758140564</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0685525387525558</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>193.93537902832</res_BB>
- <tissue_mn>[9.88399982452393 61.2290000915527 229.692001342773 380.743011474609]</tissue_mn>
- <tissue_mnr>[0.0259597674012184 0.160814508795738 0.603273034095764 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.19303272030036 39.2169523357338 44.5768081730436 27.0075789629787]</tissue_std>
- <tissue_stdr>[0.0140027143061161 0.105746254324913 0.120198801159859 0.0728243812918663]</tissue_stdr>
- <contrast>133.973297119141</contrast>
- <contrastr>0.351873278617859</contrastr>
- <res_ECR>0.410673677921295</res_ECR>
- <NCR>0.142983287572861</NCR>
- <ICR>0.375280380249023</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.99323296546936</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.8052339553833</contrastr>
- <NCR>2.38362455368042</NCR>
- <ICR>1.39057636260986</ICR>
- <SurfaceEulerNumber>2.3265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.16744901351018</SurfaceDefectArea>
- <SurfaceDefectNumber>1.725</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.32376551628113</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.37105083465576</SurfacePositionRMSE>
- <SIQR>2.66970832051007</SIQR>
- <IQR>2.24664321139858</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-003303</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>0.669796054040727</SurfaceDefectArea>
- <SurfaceDefectNumber>14.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0661882758140564</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0685525387525558</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>28</EC_abs>
- <defect_size>0.669796054040727</defect_size>
- <vol_abs_CGW>[228.555545098039 765.826721568627 638.034745098039 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.543117647058823</vol_abs_WMH>
- <vol_rel_WMH>0.000332707661795127</vol_rel_WMH>
- <surf_TSA>2157.97339516178</surf_TSA>
- <vol_TIV>1632.41701176471</vol_TIV>
- <vol_rel_CGW>[0.140010514133862 0.469136694882112 0.390852790984026 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.51295704547417 0.638318769144405]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50740313529968 0.744701674869504 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.87742828896573 0.248306936880149 0.307384484951251;2.53107451364129 0.18558453954558 0.411784654514625;3.1984245626491 0.26396919998327 0.280830860534125]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.905478925998676 0.304827153646859 0.51527352297593;4.18049814775129 0.385342682640172 0.48472647702407]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.18420983919615</vol_TIV>
- <vol_rel_CGW>[0.5 6.27544351440574 4.86948259669587 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03327076617951</vol_rel_WMH>
- <surf_TSA>8.6237993139434</surf_TSA>
- <SQR>5.21166892755295</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.397603096589241]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00136631587520242 0.00110175600275397 0.0844399854540825]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[971.396905882353 547.789894117647 334.631462745098 633.751521568627 1020.66240392157 8682.69857254902]</SPMvols0>
- <SPMvols1>[853.375882352941 517.125090196078 180.566180392157 518.74811372549 791.559749019608 8673.37658823529]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[74.0083999633789 253.465698242188 385.667114257812]</T3th>
- <Tth>
- <T3th>[-4.56178998947144 -4.56179094314575 4.84333419799805 74.0083999633789 253.465698242188 385.667114257812 541.496459960938 717.169250488281]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0200478732585907 0.0724490582942963 0.0795177817344666 0 0]</dtc>
- <ll>[0.0811702366493472 0 0.0811702366493472 0;0.186943576258628 0.00969900403703962 0.196642580295668 2068.29321289062;0.186943576258628 0.00969900403703962 0.196642580295668 2068.29321289062]</ll>
- <rmsdtc>[0.0433771014213562 0.0945158079266548 0.104679442942142]</rmsdtc>
- <rmsgdt>[0.0310330912470818 0.0428016148507595 0.0527247786521912]</rmsgdt>
- <rmsdt>0.104679442942142</rmsdt>
- <dt>0.0795177817344666</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00917517393827438 0.0346267931163311 0.0486616045236588 0.0561884641647339 0.0620903559029102 0.0696078538894653]</dtc>
- <ll>[0.0832625867748987 0 0.0832625867748987 0;0.215333867521368 0.0142521167200855 0.229585984241453 7295.30224609375;0.193270971583078 0.0165306804688021 0.20980165205188 11897.3291015625;0.173696592209572 0.0180843929279903 0.191780985137563 19499.89453125;0.157297494416507 0.0208340396956761 0.178131534112183 36446.08984375;0.157297494416507 0.0208340396956761 0.178131534112183 36446.08984375]</ll>
- <rmsdtc>[0.0107670938596129 0.0404072962701321 0.0599715821444988 0.0829194411635399 0.104917585849762 0.112631268799305]</rmsdtc>
- <rmsgdt>[0.0033435714431107 0.0129368603229523 0.0276290383189917 0.0475354194641113 0.0655074864625931 0.0710394605994225]</rmsgdt>
- <rmsdt>0.112631268799305</rmsdt>
- <dt>0.0696078538894653</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025926/ses-2/sub-0025926_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 40s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 4s</item>
- <item>25s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 51s</item>
- <item>SPM preprocessing 1 (estimate 2): 41s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 12s</item>
- <item>Update Segmentation 14s</item>
- <item>Update Skull-Stripping 29s</item>
- <item>Update probability maps 6s</item>
- <item>61s</item>
- <item>Global intensity correction: 11s</item>
- <item>SANLM denoising after intensity normalization (medium): 21s</item>
- <item>Fast Optimized Shooting registration 23s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.05) 10s</item>
- <item>Estimate local tissue thresholds (WM) 13s</item>
- <item>Estimate local tissue thresholds (GM) 18s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 28s</item>
- <item>76s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 8s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>43s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 27s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>8s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0833 0.0000 0.0833 | 32.0000</item>
- <item>2 | 2.50 | 0.0802 0.0013 0.0815 | 29.4886</item>
- <item>3 | 2.50 | 0.0793 0.0019 0.0813 | 26.9772</item>
- <item>4 | 2.50 | 0.0789 0.0022 0.0811 | 24.6107</item>
- <item>5 | 2.50 | 0.0785 0.0024 0.0809 | 22.6548</item>
- <item>6 | 2.50 | 0.0782 0.0025 0.0807 | 20.6989</item>
- <item>7 | 2.50 | 0.0779 0.0026 0.0805 | 18.9688</item>
- <item>8 | 2.50 | 0.0776 0.0027 0.0803 | 17.4455</item>
- <item>9 | 2.50 | 0.0773 0.0027 0.0800 | 15.9223</item>
- <item>10 | 2.50 | 0.0769 0.0028 0.0798 | 14.6627</item>
- <item>11 | 2.50 | 0.0766 0.0029 0.0795 | 13.4764</item>
- <item>12 | 2.50 | 0.0763 0.0030 0.0793 | 12.3015</item>
- <item>13 | 2.50 | 0.0759 0.0031 0.0790 | 11.3776</item>
- <item>14 | 2.50 | 0.0756 0.0032 0.0787 | 10.4537</item>
- <item>15 | 2.25 | 0.0749 0.0032 0.0781 | 9.5920</item>
- <item>16 | 2.25 | 0.0718 0.0048 0.0765 | 8.8725</item>
- <item>29 | 2.00 | 0.0726 0.0022 0.0747 | 3.3283</item>
- <item>30 | 2.00 | 0.0665 0.0045 0.0710 | 3.1221</item>
- <item>31 | 2.00 | 0.0644 0.0055 0.0699 | 2.9160</item>
- <item>43 | 1.75 | 0.0633 0.0032 0.0664 | 1.5785</item>
- <item>44 | 1.75 | 0.0592 0.0053 0.0645 | 1.5194</item>
- <item>45 | 1.75 | 0.0579 0.0060 0.0639 | 1.4626</item>
- <item>57 | 1.50 | 0.0564 0.0044 0.0608 | 1.0900</item>
- <item>58 | 1.50 | 0.0534 0.0063 0.0597 | 1.0730</item>
- <item>59 | 1.50 | 0.0524 0.0069 0.0594 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 109s</item>
- <item>Prepare output 7s</item>
- <item>116s</item>
- <item>Jacobian determinant (RMS): 0.011 0.040 0.060 0.083 0.105 | 0.112631</item>
- <item>Template Matching: 0.083 0.215 0.193 0.174 0.157 | 0.157297</item>
- <item>Write result maps: 23s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 23s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 31s</item>
- <item>71s</item>
- <item>Create initial surface 59s</item>
- <item>Topology correction: 71s</item>
- <item>Surface refinement: 67s</item>
- <item>Reduction of surface collisions with optimization: 52s</item>
- <item>Spherical mapping with areal smoothing 61s</item>
- <item>Spherical registration 196s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 20s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 32s</item>
- <item>68s</item>
- <item>Create initial surface 61s</item>
- <item>Topology correction: 72s</item>
- <item>Surface refinement: 58s</item>
- <item>Reduction of surface collisions with optimization: 56s</item>
- <item>Spherical mapping with areal smoothing 79s</item>
- <item>Spherical registration 202s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5128 0.6382 mm</item>
- <item>Surface intensity / position RMSE: 0.0662 / 0.0686</item>
- <item>Euler number / defect number / defect size: 28.0 / 14.5 / 0.67%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/surf/lh.thickness.sub-0025926_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/surf/rh.thickness.sub-0025926_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/sub-0025926_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1246s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 24s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 14s</item>
- <item>ROI estimation of 'anatomy3' atlas 20s</item>
- <item>ROI estimation of 'julichbrain' atlas 27s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 19s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 42s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 62s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s</item>
- <item>Write results 6s</item>
- <item>273s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/report/catreport_sub-0025926_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 35 minute(s) and 51 second(s).</item>
- <item>Image Quality Rating (IQR): 82.53% (B-)</item>
- <item>GM volume (GMV): 46.91% (765.83 / 1632.42 ml)</item>
- <item>GM thickness (GMT): 2.51 0.64 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_1955925/ds/BNU_2/sub-0025926/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|