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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <thick_limit>5</thick_limit>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_4187641/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
- </tr>
- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
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- <BV>7</BV>
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- <MB>13</MB>
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- <VT>15</VT>
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- <HD>21</HD>
- <HI>23</HI>
- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>12</SurfaceEulerNumber>
- <SurfaceDefectArea>0.283303949383632</SurfaceDefectArea>
- <SurfaceDefectNumber>10</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0650749355554581</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0637083649635315</SurfacePositionRMSE>
- <res_vx_vol>[1.33000002459862 1 1.00000001125458]</res_vx_vol>
- <res_vx_voli>[1.00000001174206 1 1.00000001174206]</res_vx_voli>
- <res_RMS>1.12084790641453</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[4.58699989318848 34.9539985656738 191.143997192383 329.898986816406]</tissue_mn>
- <tissue_mnr>[0.0139042558148503 0.105953641235828 0.579401612281799 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.34690260790604 34.7985544770116 38.2472234328417 25.0646428291057]</tissue_std>
- <tissue_stdr>[0.0102882860228419 0.10696978867054 0.117570899426937 0.0770480185747147]</tissue_stdr>
- <contrast>114.813926696777</contrast>
- <contrastr>0.348027527332306</contrastr>
- <res_ECR>0.412419438362122</res_ECR>
- <NCR>0.12895467877388</NCR>
- <ICR>0.336077123880386</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000004919725 2 2.00000002250915]</res_vx_vol>
- <res_RMS>2.24169581282906</res_RMS>
- <res_ECR>3.00214004516602</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.86292028427124</contrastr>
- <NCR>2.18223762512207</NCR>
- <ICR>1.29334604740143</ICR>
- <SurfaceEulerNumber>1.51020408163265</SurfaceEulerNumber>
- <SurfaceDefectArea>1.07082598734591</SurfaceDefectArea>
- <SurfaceDefectNumber>1.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.30149865150452</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.27416729927063</SurfacePositionRMSE>
- <SIQR>2.67009231633343</SIQR>
- <IQR>2.21336273184966</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011805</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>12</SurfaceEulerNumber>
- <SurfaceDefectArea>0.283303949383632</SurfaceDefectArea>
- <SurfaceDefectNumber>10</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0650749355554581</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0637083649635315</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>12</EC_abs>
- <defect_size>0.283303949383632</defect_size>
- <vol_abs_CGW>[230.263581878126 724.205715046549 544.487161806409 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.310152948460139</vol_abs_WMH>
- <vol_rel_WMH>0.000206912580184413</vol_rel_WMH>
- <surf_TSA>2115.40656096116</surf_TSA>
- <vol_TIV>1498.95645873108</vol_TIV>
- <vol_rel_CGW>[0.15361592428979 0.483139927666487 0.363244148043723 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.46100749269577 0.57705729128266]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.45318913459778 0.661379884499812 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.90203949243678 0.221893990453331 0.298557244802979;2.47062848097853 0.162915741663075 0.423273825150958;3.06707460158698 0.240158692284119 0.278168930046063]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.956078613306614 0.332229183383942 0.509672941788844;3.96739155471705 0.374505937875349 0.490327058211156]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.22976992417602</vol_TIV>
- <vol_rel_CGW>[0.608763008078122 6.52693835607914 4.3736377163025 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02069125801844</vol_rel_WMH>
- <surf_TSA>8.62358757004672</surf_TSA>
- <SQR>5.36415570162126</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 12551.455093403 0.395872680913522]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00184383965097368 0.00152092613279819 0.0299852397292852]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[887.055824753293 467.892563929221 442.987363344344 630.487179512318 1160.99585863751 9540.15255737542]</SPMvols0>
- <SPMvols1>[775.604669194785 441.998100576015 233.785860392216 476.284646479243 999.142266601231 9656.1421640209]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[54.6300010681152 213.751907348633 337.523712158203]</T3th>
- <Tth>
- <T3th>[-55.0669708251953 -55.0669631958008 -0.218481063842773 54.6300010681152 213.751907348633 337.523712158203 478.970581054688 631.520874023438]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0211913008242846 0.0744623839855194 0.0814783126115799 0 0]</dtc>
- <ll>[0.0824419428415898 0 0.0824419428415898 0;0.191302277747036 0.00989413061061827 0.201196408357655 2109.90356445312;0.191302277747036 0.00989413061061827 0.201196408357655 2109.90356445312]</ll>
- <rmsdtc>[0.0484153293073177 0.0950023978948593 0.104254186153412]</rmsdtc>
- <rmsgdt>[0.0349999666213989 0.0429030172526836 0.0524614490568638]</rmsgdt>
- <rmsdt>0.104254186153412</rmsdt>
- <dt>0.0814783126115799</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0097704166546464 0.035760972648859 0.0494591817259789 0.0568912662565708 0.0625907331705093 0.0694122165441513]</dtc>
- <ll>[0.0820755585695476 0 0.0820755585695476 0;0.212432554945055 0.0136291323260073 0.226061687271062 6976.412109375;0.191418125409886 0.0160993271006319 0.207517452510518 11586.87890625;0.172215982493286 0.0178792216272888 0.190095204120574 19278.6640625;0.156040886973641 0.0205202920022431 0.176561178975884 35897.234375;0.156040886973641 0.0205202920022431 0.176561178975884 35897.234375]</ll>
- <rmsdtc>[0.0112905157729983 0.0404135063290596 0.058342169970274 0.0798707231879234 0.100585408508778 0.106487594544888]</rmsdtc>
- <rmsgdt>[0.00329045881517231 0.0123558817431331 0.0261009857058525 0.0443117544054985 0.0609566979110241 0.0653076991438866]</rmsgdt>
- <rmsdt>0.106487594544888</rmsdt>
- <dt>0.0694122165441513</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025905/ses-1/sub-0025905_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 36s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>39s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 75s</item>
- <item>SPM preprocessing 1 (estimate 2): 67s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 18s</item>
- <item>Update Segmentation 20s</item>
- <item>Update Skull-Stripping 46s</item>
- <item>Update probability maps 9s</item>
- <item>93s</item>
- <item>Global intensity correction: 18s</item>
- <item>SANLM denoising after intensity normalization (medium): 27s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 4s</item>
- <item>Prepare segments (LASmod = 1.04) 14s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 27s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 42s</item>
- <item>114s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 5s</item>
- <item>67s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 32s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0821 0.0000 0.0821 | 32.0000</item>
- <item>2 | 2.50 | 0.0795 0.0012 0.0806 | 29.4886</item>
- <item>3 | 2.50 | 0.0786 0.0018 0.0804 | 26.9772</item>
- <item>4 | 2.50 | 0.0782 0.0020 0.0803 | 24.6107</item>
- <item>5 | 2.50 | 0.0779 0.0022 0.0801 | 22.6548</item>
- <item>6 | 2.50 | 0.0776 0.0023 0.0799 | 20.6989</item>
- <item>7 | 2.50 | 0.0773 0.0024 0.0797 | 18.9688</item>
- <item>8 | 2.50 | 0.0770 0.0025 0.0795 | 17.4455</item>
- <item>9 | 2.50 | 0.0767 0.0026 0.0793 | 15.9223</item>
- <item>10 | 2.50 | 0.0763 0.0027 0.0791 | 14.6627</item>
- <item>11 | 2.50 | 0.0760 0.0028 0.0789 | 13.4764</item>
- <item>12 | 2.50 | 0.0757 0.0029 0.0786 | 12.3015</item>
- <item>13 | 2.50 | 0.0753 0.0030 0.0784 | 11.3776</item>
- <item>14 | 2.50 | 0.0750 0.0031 0.0781 | 10.4537</item>
- <item>15 | 2.25 | 0.0736 0.0032 0.0767 | 9.5920</item>
- <item>16 | 2.25 | 0.0708 0.0045 0.0754 | 8.8725</item>
- <item>29 | 2.00 | 0.0717 0.0020 0.0738 | 3.3283</item>
- <item>30 | 2.00 | 0.0658 0.0044 0.0702 | 3.1221</item>
- <item>31 | 2.00 | 0.0638 0.0054 0.0692 | 2.9160</item>
- <item>43 | 1.75 | 0.0627 0.0031 0.0658 | 1.5785</item>
- <item>44 | 1.75 | 0.0587 0.0052 0.0640 | 1.5194</item>
- <item>45 | 1.75 | 0.0574 0.0060 0.0634 | 1.4626</item>
- <item>57 | 1.50 | 0.0559 0.0043 0.0602 | 1.0900</item>
- <item>58 | 1.50 | 0.0530 0.0062 0.0592 | 1.0730</item>
- <item>59 | 1.50 | 0.0520 0.0068 0.0589 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 170s</item>
- <item>Prepare output 11s</item>
- <item>181s</item>
- <item>Jacobian determinant (RMS): 0.011 0.040 0.058 0.080 0.101 | 0.106488</item>
- <item>Template Matching: 0.082 0.212 0.191 0.172 0.156 | 0.156041</item>
- <item>Write result maps: 63s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 33s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 46s</item>
- <item>102s</item>
- <item>Create initial surface 91s</item>
- <item>Topology correction: 99s</item>
- <item>Surface refinement: 116s</item>
- <item>Reduction of surface collisions with optimization: 75s</item>
- <item>Spherical mapping with areal smoothing 82s</item>
- <item>Spherical registration 294s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 43s</item>
- <item>92s</item>
- <item>Create initial surface 84s</item>
- <item>Topology correction: 98s</item>
- <item>Surface refinement: 87s</item>
- <item>Reduction of surface collisions with optimization: 76s</item>
- <item>Spherical mapping with areal smoothing 85s</item>
- <item>Spherical registration 312s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4610 0.5770 mm</item>
- <item>Surface intensity / position RMSE: 0.0651 / 0.0637</item>
- <item>Euler number / defect number / defect size: 12.0 / 10.0 / 0.28%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/surf/lh.thickness.sub-0025905_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/surf/rh.thickness.sub-0025905_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/sub-0025905_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 1798s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 13s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 46s</item>
- <item>ROI estimation of 'lpba40' atlas 13s</item>
- <item>ROI estimation of 'hammers' atlas 33s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 20s</item>
- <item>ROI estimation of 'mori' atlas 30s</item>
- <item>ROI estimation of 'anatomy3' atlas 42s</item>
- <item>ROI estimation of 'julichbrain' atlas 59s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 109s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>531s</item>
- <item>Quality check: 12s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/report/catreport_sub-0025905_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 54 minute(s) and 58 second(s).</item>
- <item>Image Quality Rating (IQR): 82.87% (B-)</item>
- <item>GM volume (GMV): 48.31% (724.21 / 1498.96 ml)</item>
- <item>GM thickness (GMT): 2.46 0.58 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_4187641/ds/BNU_1/sub-0025905/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|