[DATALAD RUNCMD] Compute IACAS/sub-0025484/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025484/ses-1/anat/sub-0025484_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025484/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025484/ses-1/label/catROI_sub-0025484_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/K1/MD5E-s58482--97566e6fd3dd5325a486070419ab3075.mat/MD5E-s58482--97566e6fd3dd5325a486070419ab3075.mat

IACAS/sub-0025484/ses-1/label/catROI_sub-0025484_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/F6/MD5E-s188539--f30c145e7814ec18b0e847357522acbd.xml/MD5E-s188539--f30c145e7814ec18b0e847357522acbd.xml

IACAS/sub-0025484/ses-1/label/catROIs_sub-0025484_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/64/MD5E-s120198--316177a8a12761fe6b3404c2bb36beec.mat/MD5E-s120198--316177a8a12761fe6b3404c2bb36beec.mat

IACAS/sub-0025484/ses-1/label/catROIs_sub-0025484_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/xJ/MD5E-s332159--7816ead6276725415f1ea2a2efe84480.xml/MD5E-s332159--7816ead6276725415f1ea2a2efe84480.xml

IACAS/sub-0025484/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025484/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/zV/MD5E-s192139--1c0d0398509e9e2a005c21707ef342ff.nii.gz/MD5E-s192139--1c0d0398509e9e2a005c21707ef342ff.nii.gz

IACAS/sub-0025484/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025484/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/ZK/MD5E-s217390--2f411b675284b14fdd475f04102f38cd.nii.gz/MD5E-s217390--2f411b675284b14fdd475f04102f38cd.nii.gz

IACAS/sub-0025484/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025484/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/vQ/MD5E-s290145--6942ff738038a8e263ddb5b044316e08.nii.gz/MD5E-s290145--6942ff738038a8e263ddb5b044316e08.nii.gz

IACAS/sub-0025484/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025484/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/Jm/MD5E-s322081--c8c35b4bcc962f36da38fbff704992b5.nii.gz/MD5E-s322081--c8c35b4bcc962f36da38fbff704992b5.nii.gz

IACAS/sub-0025484/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025484/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/k0/MD5E-s27447--e405c55dacee98345ed3e3c08bb58cf8.nii.gz/MD5E-s27447--e405c55dacee98345ed3e3c08bb58cf8.nii.gz

IACAS/sub-0025484/ses-1/mri/aal3_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025484/ses-1/mri/aal3_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/09/0j/MD5E-s216706--5299f97635a9d0baf4e14d6ad8671352.nii.gz/MD5E-s216706--5299f97635a9d0baf4e14d6ad8671352.nii.gz

IACAS/sub-0025484/ses-1/mri/anatomy3_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025484/ses-1/mri/anatomy3_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/FG/MD5E-s158356--97d4cd6de2febde4ca64072d36206889.nii.gz/MD5E-s158356--97d4cd6de2febde4ca64072d36206889.nii.gz

IACAS/sub-0025484/ses-1/mri/anon_misub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/qF/MD5E-s10469512--2305038b6603693ce71dca840793290d.nii.gz/MD5E-s10469512--2305038b6603693ce71dca840793290d.nii.gz

IACAS/sub-0025484/ses-1/mri/anon_msub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/0j/MD5E-s11647415--62a861cacbf84578697162afe8928615.nii.gz/MD5E-s11647415--62a861cacbf84578697162afe8928615.nii.gz

IACAS/sub-0025484/ses-1/mri/cat_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/92/MD5E-s123452--a96fd0c21eba6c52c6cc65aa05dbf75d.nii.gz/MD5E-s123452--a96fd0c21eba6c52c6cc65aa05dbf75d.nii.gz

IACAS/sub-0025484/ses-1/mri/cobra_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025484/ses-1/mri/cobra_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/zV/MD5E-s51735--3f6d28bf04254ef972795c9eb2338a04.nii.gz/MD5E-s51735--3f6d28bf04254ef972795c9eb2338a04.nii.gz

IACAS/sub-0025484/ses-1/mri/hammers_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025484/ses-1/mri/hammers_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/qj/MD5E-s169984--ae86d9d74d3683d819fd719115bd8d43.nii.gz/MD5E-s169984--ae86d9d74d3683d819fd719115bd8d43.nii.gz

IACAS/sub-0025484/ses-1/mri/ibsr_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025484/ses-1/mri/ibsr_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/w2/MD5E-s181090--8a6ce7de936bd1f0660ef5812063deef.nii.gz/MD5E-s181090--8a6ce7de936bd1f0660ef5812063deef.nii.gz

IACAS/sub-0025484/ses-1/mri/it_sub-0025484_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/67/MD5E-s283--4f6e87a60cdc533bb13c2a1b7fd730f0.mat/MD5E-s283--4f6e87a60cdc533bb13c2a1b7fd730f0.mat

IACAS/sub-0025484/ses-1/mri/it_sub-0025484_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/pX/MD5E-s283--d717d610eac28e575b969c83eabd6fd1.mat/MD5E-s283--d717d610eac28e575b969c83eabd6fd1.mat

IACAS/sub-0025484/ses-1/mri/iy_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/qv/MD5E-s59693105--8583037de5899eca032207665002e292.nii.gz/MD5E-s59693105--8583037de5899eca032207665002e292.nii.gz

IACAS/sub-0025484/ses-1/mri/julichbrain_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025484/ses-1/mri/julichbrain_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/lpba40_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IACAS/sub-0025484/ses-1/mri/lpba40_sub-0025484_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/04/8m/MD5E-s167482--c1b4b38562e8313443bd5e52efd53b42.nii.gz/MD5E-s167482--c1b4b38562e8313443bd5e52efd53b42.nii.gz

IACAS/sub-0025484/ses-1/mri/m0wp1sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/m0wp2sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/m0wp3sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/mori_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IACAS/sub-0025484/ses-1/mri/mori_sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/mwp1sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/XG/MD5E-s2559205--cb6a85edf9e7e98bb1c52d4419248a49.nii.gz/MD5E-s2559205--cb6a85edf9e7e98bb1c52d4419248a49.nii.gz

IACAS/sub-0025484/ses-1/mri/mwp2sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/mwp3sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/neuromorphometrics_sub-0025484_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/neuromorphometrics_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/p0sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025484/ses-1/mri/p1sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/p2sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/p3sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/rp1sub-0025484_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025484/ses-1/mri/rp2sub-0025484_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025484/ses-1/mri/rp3sub-0025484_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025484/ses-1/mri/t_sub-0025484_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025484/ses-1/mri/t_sub-0025484_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025484/ses-1/mri/thalamus_sub-0025484_ses-1_run-1_T1w.csv

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IACAS/sub-0025484/ses-1/mri/thalamus_sub-0025484_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025484/ses-1/mri/wj_sub-0025484_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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