[DATALAD RUNCMD] Compute IPCAS_3/sub-0025571/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025571/ses-1/anat/sub-0025571_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025571/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025571/ses-1/label/catROI_sub-0025571_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/71/MD5E-s61234--c6774b4f3dc26a9ce7ff21d48310331f.mat/MD5E-s61234--c6774b4f3dc26a9ce7ff21d48310331f.mat

IPCAS_3/sub-0025571/ses-1/label/catROI_sub-0025571_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/1G/MD5E-s188892--137ed1e56af152caaed7f5c8c8cf3ff4.xml/MD5E-s188892--137ed1e56af152caaed7f5c8c8cf3ff4.xml

IPCAS_3/sub-0025571/ses-1/label/catROIs_sub-0025571_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m2/z0/MD5E-s120179--6fe36fdfe4960350f4c4201a6b61fa22.mat/MD5E-s120179--6fe36fdfe4960350f4c4201a6b61fa22.mat

IPCAS_3/sub-0025571/ses-1/label/catROIs_sub-0025571_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/m7/MD5E-s332107--538f9b0696bf987d2fc151dfa40d1151.xml/MD5E-s332107--538f9b0696bf987d2fc151dfa40d1151.xml

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/6M/MD5E-s157159--accd14f1f2a4ada9de19e0d469992ff9.nii.gz/MD5E-s157159--accd14f1f2a4ada9de19e0d469992ff9.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/47/F2/MD5E-s211053--630911ba4d54dc726d9f85170bcd61ec.nii.gz/MD5E-s211053--630911ba4d54dc726d9f85170bcd61ec.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025571/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/Jm/MD5E-s233941--5682985e60e2c6e6bab207aa06bd811f.nii.gz/MD5E-s233941--5682985e60e2c6e6bab207aa06bd811f.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025571/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/p4/MD5E-s19186--86849710b88893035f242744d200d43c.nii.gz/MD5E-s19186--86849710b88893035f242744d200d43c.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/aal3_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025571/ses-1/mri/aal3_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/KG/MD5E-s158992--2cfd1f489aaa4aef707bcd6df610e20c.nii.gz/MD5E-s158992--2cfd1f489aaa4aef707bcd6df610e20c.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/anatomy3_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025571/ses-1/mri/anatomy3_sub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/fv/MD5E-s111631--90f41e8526d7c892479a330c933f204e.nii.gz/MD5E-s111631--90f41e8526d7c892479a330c933f204e.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/anon_misub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/KZ/MD5E-s3394310--cb55f9476265a5adac42a5c0b3625686.nii.gz/MD5E-s3394310--cb55f9476265a5adac42a5c0b3625686.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/anon_msub-0025571_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/jX/MD5E-s6749088--6acc559b078f1897c561839fdc64f96e.nii.gz/MD5E-s6749088--6acc559b078f1897c561839fdc64f96e.nii.gz

IPCAS_3/sub-0025571/ses-1/mri/cat_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/cobra_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_3/sub-0025571/ses-1/mri/cobra_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/hammers_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_3/sub-0025571/ses-1/mri/hammers_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/ibsr_sub-0025571_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025571/ses-1/mri/ibsr_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/it_sub-0025571_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/J7/MD5E-s283--9630757ecdce744502254ba5bf6b8b24.mat/MD5E-s283--9630757ecdce744502254ba5bf6b8b24.mat

IPCAS_3/sub-0025571/ses-1/mri/it_sub-0025571_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025571/ses-1/mri/iy_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/julichbrain_sub-0025571_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025571/ses-1/mri/julichbrain_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/lpba40_sub-0025571_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025571/ses-1/mri/lpba40_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/m0wp1sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/m0wp2sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/m0wp3sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/mori_sub-0025571_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025571/ses-1/mri/mori_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/mwp1sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/mwp2sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/mwp3sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/neuromorphometrics_sub-0025571_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025571/ses-1/mri/neuromorphometrics_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/p0sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/p1sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/p2sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/p3sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/rp1sub-0025571_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/rp2sub-0025571_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/rp3sub-0025571_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/t_sub-0025571_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025571/ses-1/mri/t_sub-0025571_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025571/ses-1/mri/thalamus_sub-0025571_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025571/ses-1/mri/thalamus_sub-0025571_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025571/ses-1/mri/wj_sub-0025571_ses-1_run-1_T1w.nii.gz

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