[DATALAD RUNCMD] Compute SWU_1/sub-0027219/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027219/ses-3/anat/sub-0027219_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027219/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027219/ses-3/label/catROI_sub-0027219_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/Gm/MD5E-s61270--a80d887d4e1c06113c15c14ea5eb8a43.mat/MD5E-s61270--a80d887d4e1c06113c15c14ea5eb8a43.mat

SWU_1/sub-0027219/ses-3/label/catROI_sub-0027219_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/G8/MD5E-s188644--8a66c3e19778eca60270fe7c7de080bd.xml/MD5E-s188644--8a66c3e19778eca60270fe7c7de080bd.xml

SWU_1/sub-0027219/ses-3/label/catROI_sub-0027219_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/75/24/MD5E-s61235--9cf2ff9222886df9087376f414fc9fb5.mat/MD5E-s61235--9cf2ff9222886df9087376f414fc9fb5.mat

SWU_1/sub-0027219/ses-3/label/catROI_sub-0027219_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qQ/Xk/MD5E-s188482--5798b0986898ec8d78c3a0dab93d4d4e.xml/MD5E-s188482--5798b0986898ec8d78c3a0dab93d4d4e.xml

SWU_1/sub-0027219/ses-3/label/catROIs_sub-0027219_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/5m/MD5E-s120058--0fe8a58a747e2362407b3b4a3ea59bd1.mat/MD5E-s120058--0fe8a58a747e2362407b3b4a3ea59bd1.mat

SWU_1/sub-0027219/ses-3/label/catROIs_sub-0027219_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/v0/MD5E-s332159--b1bcc7fd793df3b522b4b30cbc991408.xml/MD5E-s332159--b1bcc7fd793df3b522b4b30cbc991408.xml

SWU_1/sub-0027219/ses-3/label/catROIs_sub-0027219_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k7/W0/MD5E-s120034--ab060021d7ebe897006a8cd5fbd3e36c.mat/MD5E-s120034--ab060021d7ebe897006a8cd5fbd3e36c.mat

SWU_1/sub-0027219/ses-3/label/catROIs_sub-0027219_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vF/4m/MD5E-s332164--06429408263fd43724d7eb7cfe4b3a9a.xml/MD5E-s332164--06429408263fd43724d7eb7cfe4b3a9a.xml

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/2J/MD5E-s188182--05eccf5e387e652535522728c8eb58e5.nii.gz/MD5E-s188182--05eccf5e387e652535522728c8eb58e5.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qp/fM/MD5E-s187133--d62f2ddd75f328eaa1c05d76b486891b.nii.gz/MD5E-s187133--d62f2ddd75f328eaa1c05d76b486891b.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/W1/MD5E-s212371--52a005a51738cd525f3ba84bd790038b.nii.gz/MD5E-s212371--52a005a51738cd525f3ba84bd790038b.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4j/QP/MD5E-s211466--df15114b11652efe4b6bc017134d5282.nii.gz/MD5E-s211466--df15114b11652efe4b6bc017134d5282.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/1q/MD5E-s284592--487d9736495cf7d6417d1a1173745f4e.nii.gz/MD5E-s284592--487d9736495cf7d6417d1a1173745f4e.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mM/G6/MD5E-s282663--c6ee27879a4b51d367cd4394f6878f42.nii.gz/MD5E-s282663--c6ee27879a4b51d367cd4394f6878f42.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/M9/MD5E-s318517--0f54186040e44ab9181915dafb490218.nii.gz/MD5E-s318517--0f54186040e44ab9181915dafb490218.nii.gz

SWU_1/sub-0027219/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j5/5K/MD5E-s315903--d87cbfbd2a18a30fbbcdd77b1cae82f6.nii.gz/MD5E-s315903--d87cbfbd2a18a30fbbcdd77b1cae82f6.nii.gz

SWU_1/sub-0027219/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/kJ/MD5E-s27044--65115eadea8a55e9bd1beedc751c9c57.nii.gz/MD5E-s27044--65115eadea8a55e9bd1beedc751c9c57.nii.gz

SWU_1/sub-0027219/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6w/Mp/MD5E-s26361--3ac4e6a69206ddfd81c47eaa7ac0b33c.nii.gz/MD5E-s26361--3ac4e6a69206ddfd81c47eaa7ac0b33c.nii.gz

SWU_1/sub-0027219/ses-3/mri/aal3_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/gw/MD5E-s213631--d47888b6c5c1144b58565c3d1781b702.nii.gz/MD5E-s213631--d47888b6c5c1144b58565c3d1781b702.nii.gz

SWU_1/sub-0027219/ses-3/mri/aal3_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WF/94/MD5E-s211037--e9b12dff464c900964c66145651b7897.nii.gz/MD5E-s211037--e9b12dff464c900964c66145651b7897.nii.gz

SWU_1/sub-0027219/ses-3/mri/anatomy3_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/mM/MD5E-s154710--ccffb682665ee2f53f853397e446fae5.nii.gz/MD5E-s154710--ccffb682665ee2f53f853397e446fae5.nii.gz

SWU_1/sub-0027219/ses-3/mri/anatomy3_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/43/XK/MD5E-s154003--b667bdf6240644bca62bf115d3ead9e7.nii.gz/MD5E-s154003--b667bdf6240644bca62bf115d3ead9e7.nii.gz

SWU_1/sub-0027219/ses-3/mri/anon_misub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/9K/MD5E-s10178580--9558518c9b37c47cf16de74644216bb1.nii.gz/MD5E-s10178580--9558518c9b37c47cf16de74644216bb1.nii.gz

SWU_1/sub-0027219/ses-3/mri/anon_misub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pk/qW/MD5E-s10251832--804d59f8333d6dc64d008acaf6f29048.nii.gz/MD5E-s10251832--804d59f8333d6dc64d008acaf6f29048.nii.gz

SWU_1/sub-0027219/ses-3/mri/anon_msub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kK/PQ/MD5E-s11443022--3820a4249cdb6cd70c5aabd2e400863a.nii.gz/MD5E-s11443022--3820a4249cdb6cd70c5aabd2e400863a.nii.gz

SWU_1/sub-0027219/ses-3/mri/anon_msub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jX/q0/MD5E-s11546030--5b0a49f243fa221f73352c27cdd3deeb.nii.gz/MD5E-s11546030--5b0a49f243fa221f73352c27cdd3deeb.nii.gz

SWU_1/sub-0027219/ses-3/mri/cat_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/qp/MD5E-s114269--d22b687d81c833e2822ec6b9b27913a1.nii.gz/MD5E-s114269--d22b687d81c833e2822ec6b9b27913a1.nii.gz

SWU_1/sub-0027219/ses-3/mri/cat_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xV/Fk/MD5E-s113301--adacbdb2cd3e2b7e16173a4f2c3d37fe.nii.gz/MD5E-s113301--adacbdb2cd3e2b7e16173a4f2c3d37fe.nii.gz

SWU_1/sub-0027219/ses-3/mri/cobra_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/Q2/MD5E-s53526--02b4aa8556049f9a344b311f3bccc280.nii.gz/MD5E-s53526--02b4aa8556049f9a344b311f3bccc280.nii.gz

SWU_1/sub-0027219/ses-3/mri/cobra_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WX/g2/MD5E-s53183--e03c3a956e70f72965d77abf3f5c319d.nii.gz/MD5E-s53183--e03c3a956e70f72965d77abf3f5c319d.nii.gz

SWU_1/sub-0027219/ses-3/mri/hammers_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/19/MD5E-s169275--97c1f9858f5bef9e07eef22208fbfd95.nii.gz/MD5E-s169275--97c1f9858f5bef9e07eef22208fbfd95.nii.gz

SWU_1/sub-0027219/ses-3/mri/hammers_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/ibsr_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/VF/MD5E-s177479--0cbd8efed048d8dff490ca78a26ff0fb.nii.gz/MD5E-s177479--0cbd8efed048d8dff490ca78a26ff0fb.nii.gz

SWU_1/sub-0027219/ses-3/mri/ibsr_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/it_sub-0027219_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/7J/MD5E-s284--d5092ad88b1205822881212c3670baa0.mat/MD5E-s284--d5092ad88b1205822881212c3670baa0.mat

SWU_1/sub-0027219/ses-3/mri/it_sub-0027219_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/ZG/MD5E-s284--b2419c5da99750c76b1f94d155769bb0.mat/MD5E-s284--b2419c5da99750c76b1f94d155769bb0.mat

SWU_1/sub-0027219/ses-3/mri/it_sub-0027219_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xx/gq/MD5E-s283--0398dacf78e6cfb4c0bc163aecc080cf.mat/MD5E-s283--0398dacf78e6cfb4c0bc163aecc080cf.mat

SWU_1/sub-0027219/ses-3/mri/it_sub-0027219_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qk/x2/MD5E-s284--17de2c2c3d824874efbd57126212d6fa.mat/MD5E-s284--17de2c2c3d824874efbd57126212d6fa.mat

SWU_1/sub-0027219/ses-3/mri/iy_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027219/ses-3/mri/iy_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/julichbrain_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/53/MD5E-s229040--5d95d562ca928cbf1c2203b98e0a9b42.nii.gz/MD5E-s229040--5d95d562ca928cbf1c2203b98e0a9b42.nii.gz

SWU_1/sub-0027219/ses-3/mri/julichbrain_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/lpba40_sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/q8/MD5E-s165355--0d5cf7117823138ca8817707ee51d6a2.nii.gz/MD5E-s165355--0d5cf7117823138ca8817707ee51d6a2.nii.gz

SWU_1/sub-0027219/ses-3/mri/lpba40_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/m0wp1sub-0027219_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027219/ses-3/mri/m0wp1sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/m0wp2sub-0027219_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/m0wp2sub-0027219_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/m0wp3sub-0027219_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/m0wp3sub-0027219_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/mori_sub-0027219_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/mori_sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/mwp1sub-0027219_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027219/ses-3/mri/mwp1sub-0027219_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027219/ses-3/mri/mwp2sub-0027219_ses-3_run-1_T1w.nii.gz

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