[DATALAD RUNCMD] Compute BNU_2/sub-0025940/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025940/ses-1/anat/sub-0025940_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025940/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025940/ses-1/label/catROI_sub-0025940_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/45/MD5E-s57964--4c6e01d44f54752a16e89974a8df2b55.mat/MD5E-s57964--4c6e01d44f54752a16e89974a8df2b55.mat

BNU_2/sub-0025940/ses-1/label/catROI_sub-0025940_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/72/MD5E-s189109--90389b5221ad4c40dd39505431942b88.xml/MD5E-s189109--90389b5221ad4c40dd39505431942b88.xml

BNU_2/sub-0025940/ses-1/label/catROIs_sub-0025940_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/9Q/MD5E-s120066--9637a9e2fba520eaf41e20f738c42c2a.mat/MD5E-s120066--9637a9e2fba520eaf41e20f738c42c2a.mat

BNU_2/sub-0025940/ses-1/label/catROIs_sub-0025940_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/pf/MD5E-s332103--d4d12f327d635ad24060ac9741b26ee4.xml/MD5E-s332103--d4d12f327d635ad24060ac9741b26ee4.xml

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/vG/MD5E-s145760--4fa4e9b99130039e327d898b56dac613.nii.gz/MD5E-s145760--4fa4e9b99130039e327d898b56dac613.nii.gz

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/P4/MD5E-s161102--a83d36ae42537756b5d19266fc6ee920.nii.gz/MD5E-s161102--a83d36ae42537756b5d19266fc6ee920.nii.gz

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/2f/MD5E-s217896--7e9dc362235b443ae5642a8d1f1f87e3.nii.gz/MD5E-s217896--7e9dc362235b443ae5642a8d1f1f87e3.nii.gz

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025940/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/2p/MD5E-s240741--de4952ea45428e1fbc6b0f93d3473394.nii.gz/MD5E-s240741--de4952ea45428e1fbc6b0f93d3473394.nii.gz

BNU_2/sub-0025940/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025940/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/z6/MD5E-s19756--b6362780ed741e456ab39cc40a95636c.nii.gz/MD5E-s19756--b6362780ed741e456ab39cc40a95636c.nii.gz

BNU_2/sub-0025940/ses-1/mri/aal3_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025940/ses-1/mri/aal3_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/Q4/MD5E-s164178--53abd8aae21b0eb0aa08982e299a8879.nii.gz/MD5E-s164178--53abd8aae21b0eb0aa08982e299a8879.nii.gz

BNU_2/sub-0025940/ses-1/mri/anatomy3_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025940/ses-1/mri/anatomy3_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/gQ/MD5E-s115506--64b61d35728983bba4f4eaaf1eb6ec2b.nii.gz/MD5E-s115506--64b61d35728983bba4f4eaaf1eb6ec2b.nii.gz

BNU_2/sub-0025940/ses-1/mri/anon_misub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/W4/MD5E-s4385883--f1284894c9faf4de47de5c633ca5c9c1.nii.gz/MD5E-s4385883--f1284894c9faf4de47de5c633ca5c9c1.nii.gz

BNU_2/sub-0025940/ses-1/mri/anon_msub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/2V/MD5E-s9613659--1d432388245d100c54ff43586355e04f.nii.gz/MD5E-s9613659--1d432388245d100c54ff43586355e04f.nii.gz

BNU_2/sub-0025940/ses-1/mri/cat_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/Z0/MD5E-s84835--a118b63697fcebb6e7671d66a1495eb6.nii.gz/MD5E-s84835--a118b63697fcebb6e7671d66a1495eb6.nii.gz

BNU_2/sub-0025940/ses-1/mri/cobra_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025940/ses-1/mri/cobra_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/8x/MD5E-s40298--3edfaf35a97dd6598facc98557b25f69.nii.gz/MD5E-s40298--3edfaf35a97dd6598facc98557b25f69.nii.gz

BNU_2/sub-0025940/ses-1/mri/hammers_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025940/ses-1/mri/hammers_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/xj/MD5E-s127673--bbff48a2f6db64c9d10b3b0843bcd684.nii.gz/MD5E-s127673--bbff48a2f6db64c9d10b3b0843bcd684.nii.gz

BNU_2/sub-0025940/ses-1/mri/ibsr_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025940/ses-1/mri/ibsr_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/fg/MD5E-s133882--d8a24ec2f64a0f22b79aac45226d2bf2.nii.gz/MD5E-s133882--d8a24ec2f64a0f22b79aac45226d2bf2.nii.gz

BNU_2/sub-0025940/ses-1/mri/it_sub-0025940_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/7M/MD5E-s282--c6f6dc630eb9dea10a80462d15f06d65.mat/MD5E-s282--c6f6dc630eb9dea10a80462d15f06d65.mat

BNU_2/sub-0025940/ses-1/mri/it_sub-0025940_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/Pq/MD5E-s282--f57c341e8807a48c1c89f4aef7ac5a11.mat/MD5E-s282--f57c341e8807a48c1c89f4aef7ac5a11.mat

BNU_2/sub-0025940/ses-1/mri/iy_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/F1/MD5E-s34767298--ff788d9652c075b80d9fcb6153aa13a4.nii.gz/MD5E-s34767298--ff788d9652c075b80d9fcb6153aa13a4.nii.gz

BNU_2/sub-0025940/ses-1/mri/julichbrain_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025940/ses-1/mri/julichbrain_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/17/MD5E-s171641--f65487674332b5731bddfcee9baa1504.nii.gz/MD5E-s171641--f65487674332b5731bddfcee9baa1504.nii.gz

BNU_2/sub-0025940/ses-1/mri/lpba40_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025940/ses-1/mri/lpba40_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/P8/MD5E-s125612--22eb9e86a3ffbebb7bbeebbb14ad6cb5.nii.gz/MD5E-s125612--22eb9e86a3ffbebb7bbeebbb14ad6cb5.nii.gz

BNU_2/sub-0025940/ses-1/mri/m0wp1sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/82/MD5E-s2577415--0b67726690f280e52f72467b743c52c3.nii.gz/MD5E-s2577415--0b67726690f280e52f72467b743c52c3.nii.gz

BNU_2/sub-0025940/ses-1/mri/m0wp2sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/zX/MD5E-s2286393--1b94fc8a931d96c613cb0fc3f0f713e6.nii.gz/MD5E-s2286393--1b94fc8a931d96c613cb0fc3f0f713e6.nii.gz

BNU_2/sub-0025940/ses-1/mri/m0wp3sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/79/MD5E-s2473298--50eb762ef12e6cae1707b61412b57f13.nii.gz/MD5E-s2473298--50eb762ef12e6cae1707b61412b57f13.nii.gz

BNU_2/sub-0025940/ses-1/mri/mori_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025940/ses-1/mri/mori_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/0w/MD5E-s151287--9762bb365bb453eb093e0cedcb11df52.nii.gz/MD5E-s151287--9762bb365bb453eb093e0cedcb11df52.nii.gz

BNU_2/sub-0025940/ses-1/mri/mwp1sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/GZ/MD5E-s2580563--42b708305836b2c17b89af4b353f302f.nii.gz/MD5E-s2580563--42b708305836b2c17b89af4b353f302f.nii.gz

BNU_2/sub-0025940/ses-1/mri/mwp2sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/m5/MD5E-s2282883--2c0eed6ae5d9b139f36fb48215cfdf19.nii.gz/MD5E-s2282883--2c0eed6ae5d9b139f36fb48215cfdf19.nii.gz

BNU_2/sub-0025940/ses-1/mri/mwp3sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/MF/MD5E-s2469533--6f76cb73bf193fc3c62079f5975a947a.nii.gz/MD5E-s2469533--6f76cb73bf193fc3c62079f5975a947a.nii.gz

BNU_2/sub-0025940/ses-1/mri/neuromorphometrics_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025940/ses-1/mri/neuromorphometrics_sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/mQ/MD5E-s175373--bde38637f28cb339c167c09566da9e3c.nii.gz/MD5E-s175373--bde38637f28cb339c167c09566da9e3c.nii.gz

BNU_2/sub-0025940/ses-1/mri/p0sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/F8/MD5E-s729928--d6599be486ce14d30d22d3db3d1ebe2d.nii.gz/MD5E-s729928--d6599be486ce14d30d22d3db3d1ebe2d.nii.gz

BNU_2/sub-0025940/ses-1/mri/p1sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/jm/MD5E-s749862--36f48b352668ee3092e965bbcae1c4be.nii.gz/MD5E-s749862--36f48b352668ee3092e965bbcae1c4be.nii.gz

BNU_2/sub-0025940/ses-1/mri/p2sub-0025940_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/QP/MD5E-s505980--e45fd0f5d063696ab47fa47e57ae8631.nii.gz/MD5E-s505980--e45fd0f5d063696ab47fa47e57ae8631.nii.gz

BNU_2/sub-0025940/ses-1/mri/p3sub-0025940_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025940/ses-1/mri/rp1sub-0025940_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025940/ses-1/mri/rp2sub-0025940_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025940/ses-1/mri/rp3sub-0025940_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025940/ses-1/mri/t_sub-0025940_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/5M/MD5E-s284--a87fa96f26c2bc3124867d945ef3bd23.mat/MD5E-s284--a87fa96f26c2bc3124867d945ef3bd23.mat

BNU_2/sub-0025940/ses-1/mri/t_sub-0025940_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/g0/MD5E-s282--35836238f9e03ffb1854c2bc653d6369.mat/MD5E-s282--35836238f9e03ffb1854c2bc653d6369.mat

BNU_2/sub-0025940/ses-1/mri/thalamus_sub-0025940_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025940/ses-1/mri/thalamus_sub-0025940_ses-1_run-1_T1w.nii.gz

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