[DATALAD RUNCMD] Compute LMU_3/sub-0025426/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025426/ses-1/anat/sub-0025426_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025426/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025426/ses-1/label/catROI_sub-0025426_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/KK/MD5E-s58234--b542ced9474328d4b96b965793345699.mat/MD5E-s58234--b542ced9474328d4b96b965793345699.mat

LMU_3/sub-0025426/ses-1/label/catROI_sub-0025426_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/32/MD5E-s188887--006af6ae20d70782ddb6076ad5183112.xml/MD5E-s188887--006af6ae20d70782ddb6076ad5183112.xml

LMU_3/sub-0025426/ses-1/label/catROIs_sub-0025426_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/w9/MD5E-s120087--f76c0a88c012014244da1fe96c5e7243.mat/MD5E-s120087--f76c0a88c012014244da1fe96c5e7243.mat

LMU_3/sub-0025426/ses-1/label/catROIs_sub-0025426_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/zv/MD5E-s332136--8d6073fe2876096aef31a501f6a145a8.xml/MD5E-s332136--8d6073fe2876096aef31a501f6a145a8.xml

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/f5/MD5E-s176830--f6e703a153d3561aeeb5e261db4dda8f.nii.gz/MD5E-s176830--f6e703a153d3561aeeb5e261db4dda8f.nii.gz

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/3p/MD5E-s196242--8ccb51d5c5fe470847bd2f6791be7970.nii.gz/MD5E-s196242--8ccb51d5c5fe470847bd2f6791be7970.nii.gz

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/qp/MD5E-s264108--bf13434891bbe02c9332413cdcd3d36c.nii.gz/MD5E-s264108--bf13434891bbe02c9332413cdcd3d36c.nii.gz

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025426/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/V0/MD5E-s292389--017565e854cb1f3078159d2c52216844.nii.gz/MD5E-s292389--017565e854cb1f3078159d2c52216844.nii.gz

LMU_3/sub-0025426/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025426/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1P/3m/MD5E-s22897--628f67cd32591bab8c29ef6749445ca2.nii.gz/MD5E-s22897--628f67cd32591bab8c29ef6749445ca2.nii.gz

LMU_3/sub-0025426/ses-1/mri/aal3_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025426/ses-1/mri/aal3_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/gk/MD5E-s196376--71ffd7be8210a35cf3e483ae55dc12a3.nii.gz/MD5E-s196376--71ffd7be8210a35cf3e483ae55dc12a3.nii.gz

LMU_3/sub-0025426/ses-1/mri/anatomy3_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025426/ses-1/mri/anatomy3_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/1m/MD5E-s142740--49fa0b107dbcaffdecf3d9704604016b.nii.gz/MD5E-s142740--49fa0b107dbcaffdecf3d9704604016b.nii.gz

LMU_3/sub-0025426/ses-1/mri/anon_misub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/ZW/MD5E-s9332188--786c1b3a67787a481d6df7d841baf116.nii.gz/MD5E-s9332188--786c1b3a67787a481d6df7d841baf116.nii.gz

LMU_3/sub-0025426/ses-1/mri/anon_msub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/Mg/MD5E-s9997314--7bf8fbb6bcb26d10d42bb4704c589b6f.nii.gz/MD5E-s9997314--7bf8fbb6bcb26d10d42bb4704c589b6f.nii.gz

LMU_3/sub-0025426/ses-1/mri/cat_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/9F/MD5E-s113708--28a62b954b43eca50e3d4a4305288c28.nii.gz/MD5E-s113708--28a62b954b43eca50e3d4a4305288c28.nii.gz

LMU_3/sub-0025426/ses-1/mri/cobra_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025426/ses-1/mri/cobra_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/56/MD5E-s45996--aed166495f7dd91bf0ab6beacff74668.nii.gz/MD5E-s45996--aed166495f7dd91bf0ab6beacff74668.nii.gz

LMU_3/sub-0025426/ses-1/mri/hammers_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025426/ses-1/mri/hammers_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/kV/MD5E-s157402--c8609168ee98ff39fa6b7c019b17e035.nii.gz/MD5E-s157402--c8609168ee98ff39fa6b7c019b17e035.nii.gz

LMU_3/sub-0025426/ses-1/mri/ibsr_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025426/ses-1/mri/ibsr_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/02/MD5E-s165547--12dfefeb232ea9c4d6f803e19178ee1e.nii.gz/MD5E-s165547--12dfefeb232ea9c4d6f803e19178ee1e.nii.gz

LMU_3/sub-0025426/ses-1/mri/it_sub-0025426_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/kk/MD5E-s284--c251d9c1cb4c23fce3082ecb59a8087c.mat/MD5E-s284--c251d9c1cb4c23fce3082ecb59a8087c.mat

LMU_3/sub-0025426/ses-1/mri/it_sub-0025426_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/5z/MD5E-s284--5d71a4e1a0b0fe83c0f70e0c1b206feb.mat/MD5E-s284--5d71a4e1a0b0fe83c0f70e0c1b206feb.mat

LMU_3/sub-0025426/ses-1/mri/iy_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/fp/MD5E-s49890977--453c4afd5560530c24e27218a7477baa.nii.gz/MD5E-s49890977--453c4afd5560530c24e27218a7477baa.nii.gz

LMU_3/sub-0025426/ses-1/mri/julichbrain_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025426/ses-1/mri/julichbrain_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/8g/MD5E-s211930--8dc73d1d0e616a2c8de889f5d18b2266.nii.gz/MD5E-s211930--8dc73d1d0e616a2c8de889f5d18b2266.nii.gz

LMU_3/sub-0025426/ses-1/mri/lpba40_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025426/ses-1/mri/lpba40_sub-0025426_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/v7/Q7/MD5E-s151568--ba461323c004947f1abb1cba6c3389b5.nii.gz/MD5E-s151568--ba461323c004947f1abb1cba6c3389b5.nii.gz

LMU_3/sub-0025426/ses-1/mri/m0wp1sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/wg/MD5E-s2587277--8fe1064ea30c3f86631e9950eb1dfb14.nii.gz/MD5E-s2587277--8fe1064ea30c3f86631e9950eb1dfb14.nii.gz

LMU_3/sub-0025426/ses-1/mri/m0wp2sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/fq/MD5E-s2318821--5849758a01fb030b8b5f07694f07b2be.nii.gz/MD5E-s2318821--5849758a01fb030b8b5f07694f07b2be.nii.gz

LMU_3/sub-0025426/ses-1/mri/m0wp3sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/PX/MD5E-s2657843--cc1d2feaaf8cb58381a993ff51b2f027.nii.gz/MD5E-s2657843--cc1d2feaaf8cb58381a993ff51b2f027.nii.gz

LMU_3/sub-0025426/ses-1/mri/mori_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025426/ses-1/mri/mori_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/GX/MD5E-s183616--4b8e4e3451fbf2d8e3a70d2e2bdf5c5b.nii.gz/MD5E-s183616--4b8e4e3451fbf2d8e3a70d2e2bdf5c5b.nii.gz

LMU_3/sub-0025426/ses-1/mri/mwp1sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-1/mri/mwp2sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/55/MD5E-s2312981--e5c138727c52cb065cd82772abec8262.nii.gz/MD5E-s2312981--e5c138727c52cb065cd82772abec8262.nii.gz

LMU_3/sub-0025426/ses-1/mri/mwp3sub-0025426_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-1/mri/neuromorphometrics_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025426/ses-1/mri/neuromorphometrics_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-1/mri/p0sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/Kg/MD5E-s709671--e54fdd35ddde5f675c96d2ca2c8cee01.nii.gz/MD5E-s709671--e54fdd35ddde5f675c96d2ca2c8cee01.nii.gz

LMU_3/sub-0025426/ses-1/mri/p1sub-0025426_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-1/mri/p2sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/KX/MD5E-s471802--fe5e21dbb1d3e27d47604ff1455acc06.nii.gz/MD5E-s471802--fe5e21dbb1d3e27d47604ff1455acc06.nii.gz

LMU_3/sub-0025426/ses-1/mri/p3sub-0025426_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-1/mri/rp1sub-0025426_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-1/mri/rp2sub-0025426_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-1/mri/rp3sub-0025426_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-1/mri/t_sub-0025426_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/2G/MD5E-s284--beaacfa338153b644a22e7ebb0ad258a.mat/MD5E-s284--beaacfa338153b644a22e7ebb0ad258a.mat

LMU_3/sub-0025426/ses-1/mri/t_sub-0025426_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-1/mri/thalamus_sub-0025426_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-1/mri/thalamus_sub-0025426_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-1/mri/wj_sub-0025426_ses-1_run-1_T1w.nii.gz

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