[DATALAD RUNCMD] Compute SWU_1/sub-0027208/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027208/ses-3/anat/sub-0027208_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027208/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027208/ses-3/label/catROI_sub-0027208_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/5P/MD5E-s58361--07ca482dfe73532b841dcb439c584bee.mat/MD5E-s58361--07ca482dfe73532b841dcb439c584bee.mat

SWU_1/sub-0027208/ses-3/label/catROI_sub-0027208_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/K5/MD5E-s188944--4d35cc2251e193ea0ed733000dce724a.xml/MD5E-s188944--4d35cc2251e193ea0ed733000dce724a.xml

SWU_1/sub-0027208/ses-3/label/catROI_sub-0027208_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/97/vM/MD5E-s58320--469f4c371c729383b9f7db1ff2dec2db.mat/MD5E-s58320--469f4c371c729383b9f7db1ff2dec2db.mat

SWU_1/sub-0027208/ses-3/label/catROI_sub-0027208_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kq/jK/MD5E-s189039--78a7f29110b147df65de572ad7470a31.xml/MD5E-s189039--78a7f29110b147df65de572ad7470a31.xml

SWU_1/sub-0027208/ses-3/label/catROIs_sub-0027208_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/qV/MD5E-s120018--86b6062c73d1aa89d232137d41f79310.mat/MD5E-s120018--86b6062c73d1aa89d232137d41f79310.mat

SWU_1/sub-0027208/ses-3/label/catROIs_sub-0027208_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/QG/MD5E-s332144--ba9d468c0f74952f255882b57913a1cd.xml/MD5E-s332144--ba9d468c0f74952f255882b57913a1cd.xml

SWU_1/sub-0027208/ses-3/label/catROIs_sub-0027208_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xq/z1/MD5E-s120019--b5fa00bf00bc61b67f3fe4585401dc6c.mat/MD5E-s120019--b5fa00bf00bc61b67f3fe4585401dc6c.mat

SWU_1/sub-0027208/ses-3/label/catROIs_sub-0027208_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/11/K5/MD5E-s332207--62187d31535e62f0f808aa2e0c636525.xml/MD5E-s332207--62187d31535e62f0f808aa2e0c636525.xml

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/j5/MD5E-s155739--698259d627ef22bcbb9eb117d5afe093.nii.gz/MD5E-s155739--698259d627ef22bcbb9eb117d5afe093.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1M/Zx/MD5E-s155368--cf8aec10b7514364b87d5933fc808d34.nii.gz/MD5E-s155368--cf8aec10b7514364b87d5933fc808d34.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/Zg/MD5E-s175256--4a8fd7722bb9d9c7b77d80954a1e0a33.nii.gz/MD5E-s175256--4a8fd7722bb9d9c7b77d80954a1e0a33.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2k/Wq/MD5E-s175055--cc1cece00f1ee419034b4d1b3e5f3f83.nii.gz/MD5E-s175055--cc1cece00f1ee419034b4d1b3e5f3f83.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/p1/MD5E-s235777--4775ab4d0f815cc30fda39da7b604099.nii.gz/MD5E-s235777--4775ab4d0f815cc30fda39da7b604099.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KK/kZ/MD5E-s236091--7a8e4f2b6ac99003a0f6dc81b632d00d.nii.gz/MD5E-s236091--7a8e4f2b6ac99003a0f6dc81b632d00d.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/pm/MD5E-s263139--2182e443b9f923331610dc61b6eafd94.nii.gz/MD5E-s263139--2182e443b9f923331610dc61b6eafd94.nii.gz

SWU_1/sub-0027208/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZZ/GJ/MD5E-s262967--e4278726ec245c48bab3a52d0c6cb024.nii.gz/MD5E-s262967--e4278726ec245c48bab3a52d0c6cb024.nii.gz

SWU_1/sub-0027208/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/P3/MD5E-s24354--68d32089f9bf1f85c4656885102b2619.nii.gz/MD5E-s24354--68d32089f9bf1f85c4656885102b2619.nii.gz

SWU_1/sub-0027208/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gF/km/MD5E-s24595--63e97625736ce86df478c9c7608d153e.nii.gz/MD5E-s24595--63e97625736ce86df478c9c7608d153e.nii.gz

SWU_1/sub-0027208/ses-3/mri/aal3_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/jG/MD5E-s178237--bf3fd1224b3e30f8095b9a9fd1958085.nii.gz/MD5E-s178237--bf3fd1224b3e30f8095b9a9fd1958085.nii.gz

SWU_1/sub-0027208/ses-3/mri/aal3_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JJ/mq/MD5E-s178322--3786364dc1699c8dfdc8ab2dccbd9787.nii.gz/MD5E-s178322--3786364dc1699c8dfdc8ab2dccbd9787.nii.gz

SWU_1/sub-0027208/ses-3/mri/anatomy3_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/m2/MD5E-s129096--fced6e39957844aa86085c084b2b76d1.nii.gz/MD5E-s129096--fced6e39957844aa86085c084b2b76d1.nii.gz

SWU_1/sub-0027208/ses-3/mri/anatomy3_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qq/k4/MD5E-s129967--de57b595e1bf5bcde481c61d57cedbde.nii.gz/MD5E-s129967--de57b595e1bf5bcde481c61d57cedbde.nii.gz

SWU_1/sub-0027208/ses-3/mri/anon_misub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/Fj/MD5E-s8995221--4e8e196b408d8d4347df2431b349c4b6.nii.gz/MD5E-s8995221--4e8e196b408d8d4347df2431b349c4b6.nii.gz

SWU_1/sub-0027208/ses-3/mri/anon_misub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zX/zM/MD5E-s9042104--adc8409f64cad54e7702ce4b6c431159.nii.gz/MD5E-s9042104--adc8409f64cad54e7702ce4b6c431159.nii.gz

SWU_1/sub-0027208/ses-3/mri/anon_msub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/jg/MD5E-s10919580--f71b032438e5378630e6e57139f96be1.nii.gz/MD5E-s10919580--f71b032438e5378630e6e57139f96be1.nii.gz

SWU_1/sub-0027208/ses-3/mri/anon_msub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xM/vX/MD5E-s11317066--f3f3947ef2a5a13d6582e1179a18cfd2.nii.gz/MD5E-s11317066--f3f3947ef2a5a13d6582e1179a18cfd2.nii.gz

SWU_1/sub-0027208/ses-3/mri/cat_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/pq/MD5E-s93778--2e2998fcd16d55e09f3396f37490c37f.nii.gz/MD5E-s93778--2e2998fcd16d55e09f3396f37490c37f.nii.gz

SWU_1/sub-0027208/ses-3/mri/cat_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/45/39/MD5E-s93232--ab46e7cf6ffa9484a12b3fc8dc93c157.nii.gz/MD5E-s93232--ab46e7cf6ffa9484a12b3fc8dc93c157.nii.gz

SWU_1/sub-0027208/ses-3/mri/cobra_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/PF/MD5E-s47065--0342fc91699ceeaf0a61b196b36feb04.nii.gz/MD5E-s47065--0342fc91699ceeaf0a61b196b36feb04.nii.gz

SWU_1/sub-0027208/ses-3/mri/cobra_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5j/f2/MD5E-s47168--81d9b4c98e4e8377455327578df02bcb.nii.gz/MD5E-s47168--81d9b4c98e4e8377455327578df02bcb.nii.gz

SWU_1/sub-0027208/ses-3/mri/hammers_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027208/ses-3/mri/hammers_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/ibsr_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027208/ses-3/mri/ibsr_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/it_sub-0027208_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/1k/MD5E-s283--853e74a82660283cc571703ec73904e8.mat/MD5E-s283--853e74a82660283cc571703ec73904e8.mat

SWU_1/sub-0027208/ses-3/mri/it_sub-0027208_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027208/ses-3/mri/it_sub-0027208_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/it_sub-0027208_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/iy_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027208/ses-3/mri/iy_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/julichbrain_sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/julichbrain_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/lpba40_sub-0027208_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027208/ses-3/mri/lpba40_sub-0027208_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027208/ses-3/mri/m0wp1sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/m0wp1sub-0027208_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/m0wp2sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/m0wp2sub-0027208_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/m0wp3sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/m0wp3sub-0027208_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/mori_sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/mori_sub-0027208_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/mwp1sub-0027208_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/mwp1sub-0027208_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027208/ses-3/mri/mwp2sub-0027208_ses-3_run-1_T1w.nii.gz

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