[DATALAD RUNCMD] Compute JHNU/sub-0025607/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025607/ses-1/anat/sub-0025607_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025607/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025607/ses-1/label/catROI_sub-0025607_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/KW/MD5E-s57904--f98256d8aba0f253565ea835caf082bf.mat/MD5E-s57904--f98256d8aba0f253565ea835caf082bf.mat

JHNU/sub-0025607/ses-1/label/catROI_sub-0025607_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/XX/MD5E-s188737--031ee9ba680687d3cf57c92c63ffba77.xml/MD5E-s188737--031ee9ba680687d3cf57c92c63ffba77.xml

JHNU/sub-0025607/ses-1/label/catROIs_sub-0025607_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/7v/MD5E-s120069--df654f4739dae04eac5a278025f420ed.mat/MD5E-s120069--df654f4739dae04eac5a278025f420ed.mat

JHNU/sub-0025607/ses-1/label/catROIs_sub-0025607_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/Vg/MD5E-s332168--1b16d294b93b2d2005aba9c1e4764de5.xml/MD5E-s332168--1b16d294b93b2d2005aba9c1e4764de5.xml

JHNU/sub-0025607/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025607/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/fQ/MD5E-s190753--0e33aa15ad05a673b4144d501f9b7380.nii.gz/MD5E-s190753--0e33aa15ad05a673b4144d501f9b7380.nii.gz

JHNU/sub-0025607/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025607/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/vP/MD5E-s213837--e8113f305a670543c6a0d30bc753994f.nii.gz/MD5E-s213837--e8113f305a670543c6a0d30bc753994f.nii.gz

JHNU/sub-0025607/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025607/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/5p/MD5E-s268554--7bdc6b473da315822cb2da14b8bd5e1e.nii.gz/MD5E-s268554--7bdc6b473da315822cb2da14b8bd5e1e.nii.gz

JHNU/sub-0025607/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025607/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/Jz/MD5E-s298309--4b83f16a45b981cd045fb29ebf4871af.nii.gz/MD5E-s298309--4b83f16a45b981cd045fb29ebf4871af.nii.gz

JHNU/sub-0025607/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025607/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/Pq/MD5E-s25068--971a055136b309aed14204fb22421ce2.nii.gz/MD5E-s25068--971a055136b309aed14204fb22421ce2.nii.gz

JHNU/sub-0025607/ses-1/mri/aal3_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025607/ses-1/mri/aal3_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/P0/MD5E-s214181--b6299f48d131a47b036f560054b51468.nii.gz/MD5E-s214181--b6299f48d131a47b036f560054b51468.nii.gz

JHNU/sub-0025607/ses-1/mri/anatomy3_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025607/ses-1/mri/anatomy3_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/9K/MD5E-s152393--b8fc426d41c9315b5b2e8e07e7bb254f.nii.gz/MD5E-s152393--b8fc426d41c9315b5b2e8e07e7bb254f.nii.gz

JHNU/sub-0025607/ses-1/mri/anon_misub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/fv/MD5E-s5149205--dde284dfa3b42edc6493cde2df0caeb8.nii.gz/MD5E-s5149205--dde284dfa3b42edc6493cde2df0caeb8.nii.gz

JHNU/sub-0025607/ses-1/mri/anon_msub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/Vz/MD5E-s11742133--dfae633d6041aa26a0811777c83563c7.nii.gz/MD5E-s11742133--dfae633d6041aa26a0811777c83563c7.nii.gz

JHNU/sub-0025607/ses-1/mri/cat_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/j8/MD5E-s113276--558c68dcd4589ce207e108d8975a4e64.nii.gz/MD5E-s113276--558c68dcd4589ce207e108d8975a4e64.nii.gz

JHNU/sub-0025607/ses-1/mri/cobra_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025607/ses-1/mri/cobra_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/MZ/MD5E-s52074--56083a51f18ced88e94b4e2767da6f4b.nii.gz/MD5E-s52074--56083a51f18ced88e94b4e2767da6f4b.nii.gz

JHNU/sub-0025607/ses-1/mri/hammers_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025607/ses-1/mri/hammers_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/ibsr_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025607/ses-1/mri/ibsr_sub-0025607_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/jq/MD5E-s173469--bb407be53af80cc88e6257d91e999e71.nii.gz/MD5E-s173469--bb407be53af80cc88e6257d91e999e71.nii.gz

JHNU/sub-0025607/ses-1/mri/it_sub-0025607_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/kW/MD5E-s282--d4cb7852022607fbbe4be7ae7569ee84.mat/MD5E-s282--d4cb7852022607fbbe4be7ae7569ee84.mat

JHNU/sub-0025607/ses-1/mri/it_sub-0025607_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/qq/MD5E-s282--7774efc9d657b614212dd07163296a1a.mat/MD5E-s282--7774efc9d657b614212dd07163296a1a.mat

JHNU/sub-0025607/ses-1/mri/iy_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/julichbrain_sub-0025607_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025607/ses-1/mri/julichbrain_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/lpba40_sub-0025607_ses-1_run-1_T1w.csv

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JHNU/sub-0025607/ses-1/mri/lpba40_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/m0wp1sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/m0wp2sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/m0wp3sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/mori_sub-0025607_ses-1_run-1_T1w.csv

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JHNU/sub-0025607/ses-1/mri/mori_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/mwp1sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/mwp2sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/mwp3sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/neuromorphometrics_sub-0025607_ses-1_run-1_T1w.csv

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JHNU/sub-0025607/ses-1/mri/neuromorphometrics_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/p0sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/p1sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/p2sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/p3sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/rp1sub-0025607_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025607/ses-1/mri/rp2sub-0025607_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025607/ses-1/mri/rp3sub-0025607_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025607/ses-1/mri/t_sub-0025607_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025607/ses-1/mri/t_sub-0025607_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025607/ses-1/mri/thalamus_sub-0025607_ses-1_run-1_T1w.csv

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JHNU/sub-0025607/ses-1/mri/thalamus_sub-0025607_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025607/ses-1/mri/wj_sub-0025607_ses-1_run-1_T1w.nii.gz

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