[DATALAD RUNCMD] Compute LMU_3/sub-0025425/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025425/ses-1/anat/sub-0025425_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025425/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025425/ses-1/label/catROI_sub-0025425_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/3G/MD5E-s57733--179b114fe9977aa0a03a995ee8ded253.mat/MD5E-s57733--179b114fe9977aa0a03a995ee8ded253.mat

LMU_3/sub-0025425/ses-1/label/catROI_sub-0025425_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/kg/MD5E-s189182--6d335bf40cc6bd795d3761e10c0e8fd5.xml/MD5E-s189182--6d335bf40cc6bd795d3761e10c0e8fd5.xml

LMU_3/sub-0025425/ses-1/label/catROIs_sub-0025425_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/Zm/MD5E-s120277--3cbae0773338cf6d8b3a0b3cd859134f.mat/MD5E-s120277--3cbae0773338cf6d8b3a0b3cd859134f.mat

LMU_3/sub-0025425/ses-1/label/catROIs_sub-0025425_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/4K/MD5E-s332118--bb528f6add5fd48d07557fc36f33c9b9.xml/MD5E-s332118--bb528f6add5fd48d07557fc36f33c9b9.xml

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/GG/MD5E-s151495--1dedc480af2ab5d5c17aafdaefb00a6b.nii.gz/MD5E-s151495--1dedc480af2ab5d5c17aafdaefb00a6b.nii.gz

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/Fp/MD5E-s170409--cdc4d47275f259fb69d5ad9413bc6e81.nii.gz/MD5E-s170409--cdc4d47275f259fb69d5ad9413bc6e81.nii.gz

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/jF/MD5E-s228889--f0527c0ebc4d07edfa4ef3601512eb24.nii.gz/MD5E-s228889--f0527c0ebc4d07edfa4ef3601512eb24.nii.gz

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025425/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/g9/MD5E-s255769--4a4e2982e35447ad91df40eab03e9308.nii.gz/MD5E-s255769--4a4e2982e35447ad91df40eab03e9308.nii.gz

LMU_3/sub-0025425/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025425/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/6J/MD5E-s22475--6f9e6329189508e7ceaac5aacbb614a3.nii.gz/MD5E-s22475--6f9e6329189508e7ceaac5aacbb614a3.nii.gz

LMU_3/sub-0025425/ses-1/mri/aal3_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025425/ses-1/mri/aal3_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/v7/MD5E-s174079--5cec1e70da89803d086cafe6239ce032.nii.gz/MD5E-s174079--5cec1e70da89803d086cafe6239ce032.nii.gz

LMU_3/sub-0025425/ses-1/mri/anatomy3_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025425/ses-1/mri/anatomy3_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/q6/MD5E-s123063--b6fa379c24fd083b46f46b6cf8e8b36b.nii.gz/MD5E-s123063--b6fa379c24fd083b46f46b6cf8e8b36b.nii.gz

LMU_3/sub-0025425/ses-1/mri/anon_misub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/9W/MD5E-s8178528--b441916865f9dcfe853c5097634b4777.nii.gz/MD5E-s8178528--b441916865f9dcfe853c5097634b4777.nii.gz

LMU_3/sub-0025425/ses-1/mri/anon_msub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/jM/MD5E-s8627792--1309df439911c13cf6c42645c0048e39.nii.gz/MD5E-s8627792--1309df439911c13cf6c42645c0048e39.nii.gz

LMU_3/sub-0025425/ses-1/mri/cat_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/mM/MD5E-s98227--a3e2cc94c46f4a45fae201b2eeddfadb.nii.gz/MD5E-s98227--a3e2cc94c46f4a45fae201b2eeddfadb.nii.gz

LMU_3/sub-0025425/ses-1/mri/cobra_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025425/ses-1/mri/cobra_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/Mz/MD5E-s44860--54ba2978417c7b522f1de4164dd15b2b.nii.gz/MD5E-s44860--54ba2978417c7b522f1de4164dd15b2b.nii.gz

LMU_3/sub-0025425/ses-1/mri/hammers_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025425/ses-1/mri/hammers_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/2m/MD5E-s138240--646c723a34e099200ed320d83904c4e7.nii.gz/MD5E-s138240--646c723a34e099200ed320d83904c4e7.nii.gz

LMU_3/sub-0025425/ses-1/mri/ibsr_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025425/ses-1/mri/ibsr_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/k4/MD5E-s145712--937c686dd4d0603053c4e00497ac363d.nii.gz/MD5E-s145712--937c686dd4d0603053c4e00497ac363d.nii.gz

LMU_3/sub-0025425/ses-1/mri/it_sub-0025425_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/2F/MD5E-s282--868f75fe49b6bf2e96fa3a8411a7c071.mat/MD5E-s282--868f75fe49b6bf2e96fa3a8411a7c071.mat

LMU_3/sub-0025425/ses-1/mri/it_sub-0025425_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/7Q/MD5E-s282--958a2318f66d985a2370ac53b259316e.mat/MD5E-s282--958a2318f66d985a2370ac53b259316e.mat

LMU_3/sub-0025425/ses-1/mri/iy_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/j3/MD5E-s43672343--acc1845505a08b55f88837a7ad533709.nii.gz/MD5E-s43672343--acc1845505a08b55f88837a7ad533709.nii.gz

LMU_3/sub-0025425/ses-1/mri/julichbrain_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025425/ses-1/mri/julichbrain_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/VK/MD5E-s182236--ccfad5fb083c5f51d8ca261d78924d8e.nii.gz/MD5E-s182236--ccfad5fb083c5f51d8ca261d78924d8e.nii.gz

LMU_3/sub-0025425/ses-1/mri/lpba40_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025425/ses-1/mri/lpba40_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/4K/MD5E-s134725--6c5f20cabe562f3451da51ea3221d4a8.nii.gz/MD5E-s134725--6c5f20cabe562f3451da51ea3221d4a8.nii.gz

LMU_3/sub-0025425/ses-1/mri/m0wp1sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/q5/MD5E-s2593080--a8fed15a155e8e093ccea99fe529399e.nii.gz/MD5E-s2593080--a8fed15a155e8e093ccea99fe529399e.nii.gz

LMU_3/sub-0025425/ses-1/mri/m0wp2sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/1z/MD5E-s2314736--46f51faca9e181b3599dd46bb2bf9829.nii.gz/MD5E-s2314736--46f51faca9e181b3599dd46bb2bf9829.nii.gz

LMU_3/sub-0025425/ses-1/mri/m0wp3sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/1z/MD5E-s2630077--6e46502b1bf2e40cde0229e16a87529c.nii.gz/MD5E-s2630077--6e46502b1bf2e40cde0229e16a87529c.nii.gz

LMU_3/sub-0025425/ses-1/mri/mori_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025425/ses-1/mri/mori_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/g8/MD5E-s161212--8c5d73110663d1ce641ba8ed93680de2.nii.gz/MD5E-s161212--8c5d73110663d1ce641ba8ed93680de2.nii.gz

LMU_3/sub-0025425/ses-1/mri/mwp1sub-0025425_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Vv/zJ/MD5E-s2597965--536b2964c3993050e38f8a8e9eb6ec1d.nii.gz/MD5E-s2597965--536b2964c3993050e38f8a8e9eb6ec1d.nii.gz

LMU_3/sub-0025425/ses-1/mri/mwp2sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/Zf/MD5E-s2318180--1a1a51e446cef66cf77510e05e3b50f6.nii.gz/MD5E-s2318180--1a1a51e446cef66cf77510e05e3b50f6.nii.gz

LMU_3/sub-0025425/ses-1/mri/mwp3sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/WX/MD5E-s2627071--fbf3d1da19abea290e071fa3c171e043.nii.gz/MD5E-s2627071--fbf3d1da19abea290e071fa3c171e043.nii.gz

LMU_3/sub-0025425/ses-1/mri/neuromorphometrics_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025425/ses-1/mri/neuromorphometrics_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/Mm/MD5E-s185409--67ea5be57c4eba6ad3558adb3b11c226.nii.gz/MD5E-s185409--67ea5be57c4eba6ad3558adb3b11c226.nii.gz

LMU_3/sub-0025425/ses-1/mri/p0sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/px/MD5E-s605424--c5727514ab75312fc781d16d95cb952e.nii.gz/MD5E-s605424--c5727514ab75312fc781d16d95cb952e.nii.gz

LMU_3/sub-0025425/ses-1/mri/p1sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/58/MD5E-s631253--ab5c795c00346a8e10906566362e9ff5.nii.gz/MD5E-s631253--ab5c795c00346a8e10906566362e9ff5.nii.gz

LMU_3/sub-0025425/ses-1/mri/p2sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/Kj/MD5E-s400222--0fee604162c8628f3797a6b3bd0d7025.nii.gz/MD5E-s400222--0fee604162c8628f3797a6b3bd0d7025.nii.gz

LMU_3/sub-0025425/ses-1/mri/p3sub-0025425_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025425/ses-1/mri/rp1sub-0025425_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025425/ses-1/mri/rp2sub-0025425_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025425/ses-1/mri/rp3sub-0025425_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025425/ses-1/mri/t_sub-0025425_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/Pf/MD5E-s284--d5b1416a8a08e8242923295fdb287d98.mat/MD5E-s284--d5b1416a8a08e8242923295fdb287d98.mat

LMU_3/sub-0025425/ses-1/mri/t_sub-0025425_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/M6/MD5E-s285--c48bd5d7c407b0387c02f47e00a9a9f5.mat/MD5E-s285--c48bd5d7c407b0387c02f47e00a9a9f5.mat

LMU_3/sub-0025425/ses-1/mri/thalamus_sub-0025425_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

LMU_3/sub-0025425/ses-1/mri/thalamus_sub-0025425_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025425/ses-1/mri/wj_sub-0025425_ses-1_run-1_T1w.nii.gz

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