[DATALAD RUNCMD] Compute IACAS/sub-0025482/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025482/ses-2/anat/sub-0025482_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025482/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025482/ses-2/label/catROI_sub-0025482_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/WF/MD5E-s57936--92ffaa753d1d0b6d7f30842346b6582c.mat/MD5E-s57936--92ffaa753d1d0b6d7f30842346b6582c.mat

IACAS/sub-0025482/ses-2/label/catROI_sub-0025482_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/xF/MD5E-s188547--e92c60504be5e517d3366709769413e8.xml/MD5E-s188547--e92c60504be5e517d3366709769413e8.xml

IACAS/sub-0025482/ses-2/label/catROIs_sub-0025482_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/MQ/MD5E-s120110--e286ee0a38ef6c47938f076d54f464a5.mat/MD5E-s120110--e286ee0a38ef6c47938f076d54f464a5.mat

IACAS/sub-0025482/ses-2/label/catROIs_sub-0025482_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/Zz/MD5E-s332196--286d40751c3b83b3793e20883e673a45.xml/MD5E-s332196--286d40751c3b83b3793e20883e673a45.xml

IACAS/sub-0025482/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025482/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/FW/MD5E-s177236--1b8c5e717b9854d24e8cf2e299629c92.nii.gz/MD5E-s177236--1b8c5e717b9854d24e8cf2e299629c92.nii.gz

IACAS/sub-0025482/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025482/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/1X/MD5E-s198997--a208412fc82a367f7c60b33dcf88cd2d.nii.gz/MD5E-s198997--a208412fc82a367f7c60b33dcf88cd2d.nii.gz

IACAS/sub-0025482/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025482/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/qV/MD5E-s267504--ce25e88f741547daeb295f45aef0a3b7.nii.gz/MD5E-s267504--ce25e88f741547daeb295f45aef0a3b7.nii.gz

IACAS/sub-0025482/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025482/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/Mv/MD5E-s297487--2e2cea4530e32a5ab91092a9b1609600.nii.gz/MD5E-s297487--2e2cea4530e32a5ab91092a9b1609600.nii.gz

IACAS/sub-0025482/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025482/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/zx/MD5E-s26221--1e0f3b958c8bd8df8572af74538c3fc9.nii.gz/MD5E-s26221--1e0f3b958c8bd8df8572af74538c3fc9.nii.gz

IACAS/sub-0025482/ses-2/mri/aal3_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025482/ses-2/mri/aal3_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/MK/MD5E-s197972--7ca5dbe86828b2e7d584fe806eae8839.nii.gz/MD5E-s197972--7ca5dbe86828b2e7d584fe806eae8839.nii.gz

IACAS/sub-0025482/ses-2/mri/anatomy3_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025482/ses-2/mri/anatomy3_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/7z/MD5E-s146571--1b089925c30ebcd145afc1e85b675ed2.nii.gz/MD5E-s146571--1b089925c30ebcd145afc1e85b675ed2.nii.gz

IACAS/sub-0025482/ses-2/mri/anon_misub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/pK/MD5E-s9692459--e80b744b22a312b4a45ca48e56a5ace4.nii.gz/MD5E-s9692459--e80b744b22a312b4a45ca48e56a5ace4.nii.gz

IACAS/sub-0025482/ses-2/mri/anon_msub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/W9/MD5E-s11028941--ecf7412263789bdd66f1a6f482f8d3a7.nii.gz/MD5E-s11028941--ecf7412263789bdd66f1a6f482f8d3a7.nii.gz

IACAS/sub-0025482/ses-2/mri/cat_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/ZG/MD5E-s107968--ff4a2492041b550542ec776675721738.nii.gz/MD5E-s107968--ff4a2492041b550542ec776675721738.nii.gz

IACAS/sub-0025482/ses-2/mri/cobra_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025482/ses-2/mri/cobra_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025482/ses-2/mri/hammers_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025482/ses-2/mri/hammers_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/Mx/MD5E-s156714--c37c3b64b71aa66d13ad783f9c0863fe.nii.gz/MD5E-s156714--c37c3b64b71aa66d13ad783f9c0863fe.nii.gz

IACAS/sub-0025482/ses-2/mri/ibsr_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025482/ses-2/mri/ibsr_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/0Q/MD5E-s165312--d39dee5254f4c9edda5b7a84a180d1e9.nii.gz/MD5E-s165312--d39dee5254f4c9edda5b7a84a180d1e9.nii.gz

IACAS/sub-0025482/ses-2/mri/it_sub-0025482_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/jv/MD5E-s281--ab15583a774dcd5ba9cde54c990ee0ae.mat/MD5E-s281--ab15583a774dcd5ba9cde54c990ee0ae.mat

IACAS/sub-0025482/ses-2/mri/it_sub-0025482_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/5f/MD5E-s284--1426e7e1d0e3f9297807bb8f033504b1.mat/MD5E-s284--1426e7e1d0e3f9297807bb8f033504b1.mat

IACAS/sub-0025482/ses-2/mri/iy_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/mV/MD5E-s50817948--c61fa1ae8d8334856120154ef031cec7.nii.gz/MD5E-s50817948--c61fa1ae8d8334856120154ef031cec7.nii.gz

IACAS/sub-0025482/ses-2/mri/julichbrain_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025482/ses-2/mri/julichbrain_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/KM/MD5E-s214276--72f1315355041a6f1ad60ed4b17ba29e.nii.gz/MD5E-s214276--72f1315355041a6f1ad60ed4b17ba29e.nii.gz

IACAS/sub-0025482/ses-2/mri/lpba40_sub-0025482_ses-2_run-1_T1w.csv

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IACAS/sub-0025482/ses-2/mri/lpba40_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/8J/MD5E-s154369--7f553f265260cdabcf1f293ad15f20b6.nii.gz/MD5E-s154369--7f553f265260cdabcf1f293ad15f20b6.nii.gz

IACAS/sub-0025482/ses-2/mri/m0wp1sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/m0wp2sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/QP/MD5E-s2366829--970f4cb56b7fb75cd6d0e4e76f5920ed.nii.gz/MD5E-s2366829--970f4cb56b7fb75cd6d0e4e76f5920ed.nii.gz

IACAS/sub-0025482/ses-2/mri/m0wp3sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025482/ses-2/mri/mori_sub-0025482_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025482/ses-2/mri/mori_sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/mwp1sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jg/3M/MD5E-s2562190--ed602451a427cea722e13ee1c288eb10.nii.gz/MD5E-s2562190--ed602451a427cea722e13ee1c288eb10.nii.gz

IACAS/sub-0025482/ses-2/mri/mwp2sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/mwp3sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025482/ses-2/mri/neuromorphometrics_sub-0025482_ses-2_run-1_T1w.csv

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IACAS/sub-0025482/ses-2/mri/neuromorphometrics_sub-0025482_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025482/ses-2/mri/p0sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/p1sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/p2sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/p3sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/rp1sub-0025482_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025482/ses-2/mri/rp2sub-0025482_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025482/ses-2/mri/rp3sub-0025482_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025482/ses-2/mri/t_sub-0025482_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025482/ses-2/mri/t_sub-0025482_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025482/ses-2/mri/thalamus_sub-0025482_ses-2_run-1_T1w.csv

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IACAS/sub-0025482/ses-2/mri/thalamus_sub-0025482_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025482/ses-2/mri/wj_sub-0025482_ses-2_run-1_T1w.nii.gz

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