[DATALAD RUNCMD] Compute SWU_1/sub-0027214/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027214/ses-3/anat/sub-0027214_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027214/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027214/ses-3/label/catROI_sub-0027214_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/zM/MD5E-s61344--7181cd55b02f9a014a2871e319c156e5.mat/MD5E-s61344--7181cd55b02f9a014a2871e319c156e5.mat

SWU_1/sub-0027214/ses-3/label/catROI_sub-0027214_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/60/MD5E-s189301--1fb2ef3b5f5121709010dc529700e33d.xml/MD5E-s189301--1fb2ef3b5f5121709010dc529700e33d.xml

SWU_1/sub-0027214/ses-3/label/catROI_sub-0027214_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/px/57/MD5E-s61324--f86f786469f2ebed0febfdf93f09712e.mat/MD5E-s61324--f86f786469f2ebed0febfdf93f09712e.mat

SWU_1/sub-0027214/ses-3/label/catROI_sub-0027214_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j2/KP/MD5E-s189258--07fece691364a7e78290d5afbebec5eb.xml/MD5E-s189258--07fece691364a7e78290d5afbebec5eb.xml

SWU_1/sub-0027214/ses-3/label/catROIs_sub-0027214_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/J4/MD5E-s120046--469da21539630de12bde8c5c7546c34f.mat/MD5E-s120046--469da21539630de12bde8c5c7546c34f.mat

SWU_1/sub-0027214/ses-3/label/catROIs_sub-0027214_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/G3/MD5E-s332126--829e6f1e83d5c5f923f5d01172dbd673.xml/MD5E-s332126--829e6f1e83d5c5f923f5d01172dbd673.xml

SWU_1/sub-0027214/ses-3/label/catROIs_sub-0027214_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mz/8k/MD5E-s120069--ca9259e61a7ba2c7d2f32aca63bd2378.mat/MD5E-s120069--ca9259e61a7ba2c7d2f32aca63bd2378.mat

SWU_1/sub-0027214/ses-3/label/catROIs_sub-0027214_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m1/j8/MD5E-s332142--041d95d043be5e0452974484639452b0.xml/MD5E-s332142--041d95d043be5e0452974484639452b0.xml

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/J5/MD5E-s161309--42c9773f5d8bde4cf60c0e72185bf973.nii.gz/MD5E-s161309--42c9773f5d8bde4cf60c0e72185bf973.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3Q/xG/MD5E-s161667--96bdbfc91addbdd3a6d21cce43fb547d.nii.gz/MD5E-s161667--96bdbfc91addbdd3a6d21cce43fb547d.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/4F/MD5E-s180217--3d9e634c06886c46d894ba8bfe5b8661.nii.gz/MD5E-s180217--3d9e634c06886c46d894ba8bfe5b8661.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PZ/z0/MD5E-s179898--964892f9c6d0a036f813f0e96f7b58c3.nii.gz/MD5E-s179898--964892f9c6d0a036f813f0e96f7b58c3.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/qp/MD5E-s242962--c69d0f2050df1a2a7d25419624f241d2.nii.gz/MD5E-s242962--c69d0f2050df1a2a7d25419624f241d2.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wk/j8/MD5E-s242918--98f40dc114a45b1a717e058d6f689b09.nii.gz/MD5E-s242918--98f40dc114a45b1a717e058d6f689b09.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/gF/MD5E-s270270--5727a07c2b5099caa8f5db15320e277d.nii.gz/MD5E-s270270--5727a07c2b5099caa8f5db15320e277d.nii.gz

SWU_1/sub-0027214/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/97/mx/MD5E-s269917--578407de0f8cb9411eeb303130a279d7.nii.gz/MD5E-s269917--578407de0f8cb9411eeb303130a279d7.nii.gz

SWU_1/sub-0027214/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/6Z/MD5E-s25018--dc599cfec45915e744b9d1716b02432a.nii.gz/MD5E-s25018--dc599cfec45915e744b9d1716b02432a.nii.gz

SWU_1/sub-0027214/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K9/89/MD5E-s25117--a4d946f1a6ce9edcbe4d6520d6b8382e.nii.gz/MD5E-s25117--a4d946f1a6ce9edcbe4d6520d6b8382e.nii.gz

SWU_1/sub-0027214/ses-3/mri/aal3_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/46/MD5E-s181557--7180464904b50443afb30ab2dd1f5941.nii.gz/MD5E-s181557--7180464904b50443afb30ab2dd1f5941.nii.gz

SWU_1/sub-0027214/ses-3/mri/aal3_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X3/qv/MD5E-s181795--0f852c256d9c61fc9a87336487277a6e.nii.gz/MD5E-s181795--0f852c256d9c61fc9a87336487277a6e.nii.gz

SWU_1/sub-0027214/ses-3/mri/anatomy3_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/7f/MD5E-s130253--8c53a8a3a3488699473bbbce9f8eb66f.nii.gz/MD5E-s130253--8c53a8a3a3488699473bbbce9f8eb66f.nii.gz

SWU_1/sub-0027214/ses-3/mri/anatomy3_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WW/8q/MD5E-s130633--22200df92a3225391164d34c77885151.nii.gz/MD5E-s130633--22200df92a3225391164d34c77885151.nii.gz

SWU_1/sub-0027214/ses-3/mri/anon_misub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/60/MD5E-s9243912--bc4e29c6120ffd1330fa3d1d2c74ce35.nii.gz/MD5E-s9243912--bc4e29c6120ffd1330fa3d1d2c74ce35.nii.gz

SWU_1/sub-0027214/ses-3/mri/anon_misub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P5/Wv/MD5E-s9021276--0b05652ff3286866bc2a73e55f0b2313.nii.gz/MD5E-s9021276--0b05652ff3286866bc2a73e55f0b2313.nii.gz

SWU_1/sub-0027214/ses-3/mri/anon_msub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/GQ/MD5E-s10540534--d7c5cf118830d3923808ea43d8e14efd.nii.gz/MD5E-s10540534--d7c5cf118830d3923808ea43d8e14efd.nii.gz

SWU_1/sub-0027214/ses-3/mri/anon_msub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/81/67/MD5E-s10142862--882e0cfb7e3f14490d812f526c81944c.nii.gz/MD5E-s10142862--882e0cfb7e3f14490d812f526c81944c.nii.gz

SWU_1/sub-0027214/ses-3/mri/cat_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/pk/MD5E-s98361--bb709d753c26bdcf07470737cbdbf1c0.nii.gz/MD5E-s98361--bb709d753c26bdcf07470737cbdbf1c0.nii.gz

SWU_1/sub-0027214/ses-3/mri/cat_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mj/gV/MD5E-s97412--96ca314d495f7f03871c2ffb4d648462.nii.gz/MD5E-s97412--96ca314d495f7f03871c2ffb4d648462.nii.gz

SWU_1/sub-0027214/ses-3/mri/cobra_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/M8/MD5E-s45473--71a93b2c29ee49a4df1431f396a17e55.nii.gz/MD5E-s45473--71a93b2c29ee49a4df1431f396a17e55.nii.gz

SWU_1/sub-0027214/ses-3/mri/cobra_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G1/63/MD5E-s45229--6ef17f4b16ba8cf91f9cb4f8f469ed87.nii.gz/MD5E-s45229--6ef17f4b16ba8cf91f9cb4f8f469ed87.nii.gz

SWU_1/sub-0027214/ses-3/mri/hammers_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/X9/MD5E-s143492--571b88a27874ceed3480e2b85ea194ad.nii.gz/MD5E-s143492--571b88a27874ceed3480e2b85ea194ad.nii.gz

SWU_1/sub-0027214/ses-3/mri/hammers_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/ibsr_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/vV/MD5E-s151967--c4342e4d53dc55d5c9bba297f0b746b3.nii.gz/MD5E-s151967--c4342e4d53dc55d5c9bba297f0b746b3.nii.gz

SWU_1/sub-0027214/ses-3/mri/ibsr_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/it_sub-0027214_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/xF/MD5E-s284--3d2f16120ab1346d92efcb562e734e93.mat/MD5E-s284--3d2f16120ab1346d92efcb562e734e93.mat

SWU_1/sub-0027214/ses-3/mri/it_sub-0027214_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027214/ses-3/mri/it_sub-0027214_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2K/6m/MD5E-s282--1efebe4281db90da360f0957c2b6dbc2.mat/MD5E-s282--1efebe4281db90da360f0957c2b6dbc2.mat

SWU_1/sub-0027214/ses-3/mri/it_sub-0027214_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/iy_sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/iy_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/julichbrain_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027214/ses-3/mri/julichbrain_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/lpba40_sub-0027214_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/7X/MD5E-s140231--25d4aaeeb4fcbf2d92698103529cd0fb.nii.gz/MD5E-s140231--25d4aaeeb4fcbf2d92698103529cd0fb.nii.gz

SWU_1/sub-0027214/ses-3/mri/lpba40_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/m0wp1sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/m0wp1sub-0027214_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/m0wp2sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/m0wp2sub-0027214_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/m0wp3sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/m0wp3sub-0027214_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/mori_sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/mori_sub-0027214_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027214/ses-3/mri/mwp1sub-0027214_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/mwp1sub-0027214_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027214/ses-3/mri/mwp2sub-0027214_ses-3_run-1_T1w.nii.gz

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