[DATALAD RUNCMD] Compute BNU_2/sub-0025963/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025963/ses-1/anat/sub-0025963_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025963/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025963/ses-1/label/catROI_sub-0025963_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/63/MD5E-s58079--174fb725f921223bc8f07a038c596f83.mat/MD5E-s58079--174fb725f921223bc8f07a038c596f83.mat

BNU_2/sub-0025963/ses-1/label/catROI_sub-0025963_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/90/MD5E-s188708--8b4fdb2ba82943c2f2867ed67dd98cac.xml/MD5E-s188708--8b4fdb2ba82943c2f2867ed67dd98cac.xml

BNU_2/sub-0025963/ses-1/label/catROIs_sub-0025963_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m8/6f/MD5E-s120091--f27767d9da23abb4a014b3ff9d795b20.mat/MD5E-s120091--f27767d9da23abb4a014b3ff9d795b20.mat

BNU_2/sub-0025963/ses-1/label/catROIs_sub-0025963_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/ff/MD5E-s332138--7bd4d11c80f106ebf004f732568de5ae.xml/MD5E-s332138--7bd4d11c80f106ebf004f732568de5ae.xml

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jm/82/MD5E-s150515--1e252d84fe3f8ec8c4bc8fafd9b3e8e8.nii.gz/MD5E-s150515--1e252d84fe3f8ec8c4bc8fafd9b3e8e8.nii.gz

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/1K/MD5E-s168442--046c0da6cc3d5e54b8118833c8238616.nii.gz/MD5E-s168442--046c0da6cc3d5e54b8118833c8238616.nii.gz

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/73/MD5E-s225091--cffe70a52e6d3b5b367822885d084679.nii.gz/MD5E-s225091--cffe70a52e6d3b5b367822885d084679.nii.gz

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025963/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/jg/MD5E-s250393--53f5bf789e7f277ce2a4c66c4c090d32.nii.gz/MD5E-s250393--53f5bf789e7f277ce2a4c66c4c090d32.nii.gz

BNU_2/sub-0025963/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025963/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/2P/MD5E-s19614--7ac2033e192d36a45e1754ea701aed60.nii.gz/MD5E-s19614--7ac2033e192d36a45e1754ea701aed60.nii.gz

BNU_2/sub-0025963/ses-1/mri/aal3_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025963/ses-1/mri/aal3_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/wG/MD5E-s170632--61d0570a3e1fc76a35d3d2414f2d8c54.nii.gz/MD5E-s170632--61d0570a3e1fc76a35d3d2414f2d8c54.nii.gz

BNU_2/sub-0025963/ses-1/mri/anatomy3_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025963/ses-1/mri/anatomy3_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/vk/MD5E-s121338--dbb727d0d1d67c549af41f046cdaaa6b.nii.gz/MD5E-s121338--dbb727d0d1d67c549af41f046cdaaa6b.nii.gz

BNU_2/sub-0025963/ses-1/mri/anon_misub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/6F/MD5E-s4048602--e00a52789b9978332481e08800679748.nii.gz/MD5E-s4048602--e00a52789b9978332481e08800679748.nii.gz

BNU_2/sub-0025963/ses-1/mri/anon_msub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/wq/MD5E-s6991259--2614af30e2315bf9792953c0989ef639.nii.gz/MD5E-s6991259--2614af30e2315bf9792953c0989ef639.nii.gz

BNU_2/sub-0025963/ses-1/mri/cat_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/qw/MD5E-s90421--6a16ef843129d5598e54b97f18c646a6.nii.gz/MD5E-s90421--6a16ef843129d5598e54b97f18c646a6.nii.gz

BNU_2/sub-0025963/ses-1/mri/cobra_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025963/ses-1/mri/cobra_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/pQ/MD5E-s42935--352a6450238042b8432e712ffb7d557f.nii.gz/MD5E-s42935--352a6450238042b8432e712ffb7d557f.nii.gz

BNU_2/sub-0025963/ses-1/mri/hammers_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025963/ses-1/mri/hammers_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/PX/MD5E-s135046--e8d53aa4cd47f9d8fecabe80ec9b5a77.nii.gz/MD5E-s135046--e8d53aa4cd47f9d8fecabe80ec9b5a77.nii.gz

BNU_2/sub-0025963/ses-1/mri/ibsr_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025963/ses-1/mri/ibsr_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/gk/MD5E-s141309--16e7aec9838cd1aef23d3ac2ce3efcf0.nii.gz/MD5E-s141309--16e7aec9838cd1aef23d3ac2ce3efcf0.nii.gz

BNU_2/sub-0025963/ses-1/mri/it_sub-0025963_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/46/MD5E-s282--1c3a4ea5f54bc321e4b5d55db203efb4.mat/MD5E-s282--1c3a4ea5f54bc321e4b5d55db203efb4.mat

BNU_2/sub-0025963/ses-1/mri/it_sub-0025963_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/x4/MD5E-s283--b7834ec500428cea6f6f1529bc46cda8.mat/MD5E-s283--b7834ec500428cea6f6f1529bc46cda8.mat

BNU_2/sub-0025963/ses-1/mri/iy_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/z3/MD5E-s36560848--f827e11ee6c6828d0c6f31d22edc8b73.nii.gz/MD5E-s36560848--f827e11ee6c6828d0c6f31d22edc8b73.nii.gz

BNU_2/sub-0025963/ses-1/mri/julichbrain_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025963/ses-1/mri/julichbrain_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/mq/MD5E-s180958--dbfe026263cee00fe7dad33bbf1841b8.nii.gz/MD5E-s180958--dbfe026263cee00fe7dad33bbf1841b8.nii.gz

BNU_2/sub-0025963/ses-1/mri/lpba40_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025963/ses-1/mri/lpba40_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/Z0/MD5E-s132701--4039f46e2554ab511853493fc0558580.nii.gz/MD5E-s132701--4039f46e2554ab511853493fc0558580.nii.gz

BNU_2/sub-0025963/ses-1/mri/m0wp1sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/xp/MD5E-s2577252--5914acb7825613e1c02febf80d60c781.nii.gz/MD5E-s2577252--5914acb7825613e1c02febf80d60c781.nii.gz

BNU_2/sub-0025963/ses-1/mri/m0wp2sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/54/MD5E-s2289067--c59143918be25a200a7f1dc854a7bf0b.nii.gz/MD5E-s2289067--c59143918be25a200a7f1dc854a7bf0b.nii.gz

BNU_2/sub-0025963/ses-1/mri/m0wp3sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/3F/MD5E-s2522245--42196de6fc9d4c87304c32a92d58e914.nii.gz/MD5E-s2522245--42196de6fc9d4c87304c32a92d58e914.nii.gz

BNU_2/sub-0025963/ses-1/mri/mori_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025963/ses-1/mri/mori_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/2w/MD5E-s156616--32d4a5067ca6b69ec32bc86b707c3f59.nii.gz/MD5E-s156616--32d4a5067ca6b69ec32bc86b707c3f59.nii.gz

BNU_2/sub-0025963/ses-1/mri/mwp1sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/pw/MD5E-s2577854--8730a541656cda419a27639ea90e629e.nii.gz/MD5E-s2577854--8730a541656cda419a27639ea90e629e.nii.gz

BNU_2/sub-0025963/ses-1/mri/mwp2sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/Xg/MD5E-s2285122--8721437d4b8b8a10d07daf658f8bc853.nii.gz/MD5E-s2285122--8721437d4b8b8a10d07daf658f8bc853.nii.gz

BNU_2/sub-0025963/ses-1/mri/mwp3sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/xM/MD5E-s2518263--9643d39f77255a07545feefb4990a575.nii.gz/MD5E-s2518263--9643d39f77255a07545feefb4990a575.nii.gz

BNU_2/sub-0025963/ses-1/mri/neuromorphometrics_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025963/ses-1/mri/neuromorphometrics_sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025963/ses-1/mri/p0sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/wz/MD5E-s799556--b70ba17f5637a545e8d8a35b8033a659.nii.gz/MD5E-s799556--b70ba17f5637a545e8d8a35b8033a659.nii.gz

BNU_2/sub-0025963/ses-1/mri/p1sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025963/ses-1/mri/p2sub-0025963_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025963/ses-1/mri/p3sub-0025963_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025963/ses-1/mri/rp1sub-0025963_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025963/ses-1/mri/rp2sub-0025963_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025963/ses-1/mri/rp3sub-0025963_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025963/ses-1/mri/t_sub-0025963_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/xp/MD5E-s284--33e546a0b05bb9992585092022b45d9f.mat/MD5E-s284--33e546a0b05bb9992585092022b45d9f.mat

BNU_2/sub-0025963/ses-1/mri/t_sub-0025963_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025963/ses-1/mri/thalamus_sub-0025963_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025963/ses-1/mri/thalamus_sub-0025963_ses-1_run-1_T1w.nii.gz

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