[DATALAD RUNCMD] Compute IPCAS_3/sub-0025552/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025552/ses-1/anat/sub-0025552_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025552/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025552/ses-1/label/catROI_sub-0025552_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/Fz/MD5E-s57993--e34a962be1e2fe5df2c5082009444daa.mat/MD5E-s57993--e34a962be1e2fe5df2c5082009444daa.mat

IPCAS_3/sub-0025552/ses-1/label/catROI_sub-0025552_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/X5/MD5E-s188808--c044d7393bb7687ceef65640698e1d1c.xml/MD5E-s188808--c044d7393bb7687ceef65640698e1d1c.xml

IPCAS_3/sub-0025552/ses-1/label/catROIs_sub-0025552_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/06/MD5E-s120035--0d012d7d18446826c8c813ac1e2329e0.mat/MD5E-s120035--0d012d7d18446826c8c813ac1e2329e0.mat

IPCAS_3/sub-0025552/ses-1/label/catROIs_sub-0025552_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/gg/MD5E-s332061--72d2eb0d0e3e8c4e9add91384eea5d24.xml/MD5E-s332061--72d2eb0d0e3e8c4e9add91384eea5d24.xml

IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025552/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/aal3_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/aal3_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/anatomy3_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/anatomy3_sub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/5P/MD5E-s115035--d7436609396ef6231b4265c2c4b3de55.nii.gz/MD5E-s115035--d7436609396ef6231b4265c2c4b3de55.nii.gz

IPCAS_3/sub-0025552/ses-1/mri/anon_misub-0025552_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/anon_msub-0025552_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mq/2P/MD5E-s9521864--e3f7ed9eee7a960dba1470d55349f93f.nii.gz/MD5E-s9521864--e3f7ed9eee7a960dba1470d55349f93f.nii.gz

IPCAS_3/sub-0025552/ses-1/mri/cat_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/cobra_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/cobra_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/hammers_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/hammers_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/ibsr_sub-0025552_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025552/ses-1/mri/ibsr_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/it_sub-0025552_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/3Q/MD5E-s283--6210939a5cc2a905c32a9ca1b9f6698f.mat/MD5E-s283--6210939a5cc2a905c32a9ca1b9f6698f.mat

IPCAS_3/sub-0025552/ses-1/mri/it_sub-0025552_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025552/ses-1/mri/iy_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/julichbrain_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/julichbrain_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/lpba40_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/lpba40_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/m0wp1sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/m0wp2sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/m0wp3sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/mori_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/mori_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/mwp1sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/mwp2sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/mwp3sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/neuromorphometrics_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/neuromorphometrics_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/p0sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/p1sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/p2sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/p3sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/rp1sub-0025552_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/rp2sub-0025552_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/rp3sub-0025552_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/t_sub-0025552_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025552/ses-1/mri/t_sub-0025552_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025552/ses-1/mri/thalamus_sub-0025552_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025552/ses-1/mri/thalamus_sub-0025552_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025552/ses-1/mri/wj_sub-0025552_ses-1_run-1_T1w.nii.gz

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