[DATALAD RUNCMD] Compute LMU_3/sub-0025402/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025402/ses-1/anat/sub-0025402_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025402/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025402/ses-1/label/catROI_sub-0025402_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/vm/MD5E-s61388--d1d51de41285de688e48c232357dd549.mat/MD5E-s61388--d1d51de41285de688e48c232357dd549.mat

LMU_3/sub-0025402/ses-1/label/catROI_sub-0025402_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/Zg/MD5E-s189436--0d40403e5f42807bcecda56a433a9778.xml/MD5E-s189436--0d40403e5f42807bcecda56a433a9778.xml

LMU_3/sub-0025402/ses-1/label/catROIs_sub-0025402_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/jk/MD5E-s120333--3218b86ee57524576c6533413d5bd3b5.mat/MD5E-s120333--3218b86ee57524576c6533413d5bd3b5.mat

LMU_3/sub-0025402/ses-1/label/catROIs_sub-0025402_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/G5/MD5E-s332122--0f6990d2ea972f6d0341461393ead1f2.xml/MD5E-s332122--0f6990d2ea972f6d0341461393ead1f2.xml

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/Mv/MD5E-s160284--9dd96c8eca7b557555bd1d34000dd4dc.nii.gz/MD5E-s160284--9dd96c8eca7b557555bd1d34000dd4dc.nii.gz

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/MK/MD5E-s179359--90ed2860cd7e9dc52beaed425a750ce1.nii.gz/MD5E-s179359--90ed2860cd7e9dc52beaed425a750ce1.nii.gz

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/wJ/MD5E-s243377--895c8ba56413857a128d12babd3a060f.nii.gz/MD5E-s243377--895c8ba56413857a128d12babd3a060f.nii.gz

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025402/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/5g/MD5E-s269033--74a5ac536d1df6b531ac8477a9d35a7c.nii.gz/MD5E-s269033--74a5ac536d1df6b531ac8477a9d35a7c.nii.gz

LMU_3/sub-0025402/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025402/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/Kf/MD5E-s23413--ec2b3b3b2be3f9099e83eb707c074d92.nii.gz/MD5E-s23413--ec2b3b3b2be3f9099e83eb707c074d92.nii.gz

LMU_3/sub-0025402/ses-1/mri/aal3_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025402/ses-1/mri/aal3_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/86/MD5E-s185633--51c1a201838ca4c43e3851f97041c2c5.nii.gz/MD5E-s185633--51c1a201838ca4c43e3851f97041c2c5.nii.gz

LMU_3/sub-0025402/ses-1/mri/anatomy3_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025402/ses-1/mri/anatomy3_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/Px/MD5E-s128415--b212891188b921722cf78fe7a5478a2a.nii.gz/MD5E-s128415--b212891188b921722cf78fe7a5478a2a.nii.gz

LMU_3/sub-0025402/ses-1/mri/anon_misub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/pV/MD5E-s8634485--74b51546754895ce60a434c6e34c4cf7.nii.gz/MD5E-s8634485--74b51546754895ce60a434c6e34c4cf7.nii.gz

LMU_3/sub-0025402/ses-1/mri/anon_msub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/f6/MD5E-s9108563--9bb05aa84c3206a6b3f4b0322e83f8d6.nii.gz/MD5E-s9108563--9bb05aa84c3206a6b3f4b0322e83f8d6.nii.gz

LMU_3/sub-0025402/ses-1/mri/cat_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/59/MD5E-s104969--345b6d8f541f8a84bc25f9cf171c0d72.nii.gz/MD5E-s104969--345b6d8f541f8a84bc25f9cf171c0d72.nii.gz

LMU_3/sub-0025402/ses-1/mri/cobra_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025402/ses-1/mri/cobra_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/QM/MD5E-s47107--0c23991f67f8ebee6e664f32d97fc3b8.nii.gz/MD5E-s47107--0c23991f67f8ebee6e664f32d97fc3b8.nii.gz

LMU_3/sub-0025402/ses-1/mri/hammers_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025402/ses-1/mri/hammers_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/0p/MD5E-s145515--f9a90c13a1f8cc164769b77f35529aea.nii.gz/MD5E-s145515--f9a90c13a1f8cc164769b77f35529aea.nii.gz

LMU_3/sub-0025402/ses-1/mri/ibsr_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025402/ses-1/mri/ibsr_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/X7/MD5E-s153371--bc933a4409913895fd602d94cb562822.nii.gz/MD5E-s153371--bc933a4409913895fd602d94cb562822.nii.gz

LMU_3/sub-0025402/ses-1/mri/it_sub-0025402_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/27/MD5E-s284--ac304d9432b5a34b197ff30b6d0d75d3.mat/MD5E-s284--ac304d9432b5a34b197ff30b6d0d75d3.mat

LMU_3/sub-0025402/ses-1/mri/it_sub-0025402_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/05/pp/MD5E-s281--5d4d0b49c3465de317d151ee812078ad.mat/MD5E-s281--5d4d0b49c3465de317d151ee812078ad.mat

LMU_3/sub-0025402/ses-1/mri/iy_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/Q4/MD5E-s45205208--0277b335b228e369875ad1fc0e4520ad.nii.gz/MD5E-s45205208--0277b335b228e369875ad1fc0e4520ad.nii.gz

LMU_3/sub-0025402/ses-1/mri/julichbrain_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025402/ses-1/mri/julichbrain_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wz/kv/MD5E-s193627--117072e18716380d4e6a911c3527db7f.nii.gz/MD5E-s193627--117072e18716380d4e6a911c3527db7f.nii.gz

LMU_3/sub-0025402/ses-1/mri/lpba40_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025402/ses-1/mri/lpba40_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/Jq/MD5E-s141977--29891e43e7b1730e697aa65521928139.nii.gz/MD5E-s141977--29891e43e7b1730e697aa65521928139.nii.gz

LMU_3/sub-0025402/ses-1/mri/m0wp1sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/G5/MD5E-s2616056--f4ba5e0c2a607cd740e799eff34403a6.nii.gz/MD5E-s2616056--f4ba5e0c2a607cd740e799eff34403a6.nii.gz

LMU_3/sub-0025402/ses-1/mri/m0wp2sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/0g/MD5E-s2374155--aa9d0a6730593d1fbcf0e9bc485fd6a5.nii.gz/MD5E-s2374155--aa9d0a6730593d1fbcf0e9bc485fd6a5.nii.gz

LMU_3/sub-0025402/ses-1/mri/m0wp3sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/G5/MD5E-s2698540--24d155241a659ae0d79c713b6af2e4ba.nii.gz/MD5E-s2698540--24d155241a659ae0d79c713b6af2e4ba.nii.gz

LMU_3/sub-0025402/ses-1/mri/mori_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025402/ses-1/mri/mori_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/j6/MD5E-s171957--0d16bdf64defde894fb56185f20eec92.nii.gz/MD5E-s171957--0d16bdf64defde894fb56185f20eec92.nii.gz

LMU_3/sub-0025402/ses-1/mri/mwp1sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/vv/MD5E-s2619511--8bb4fa1c3579ef63a584d57a3e76980d.nii.gz/MD5E-s2619511--8bb4fa1c3579ef63a584d57a3e76980d.nii.gz

LMU_3/sub-0025402/ses-1/mri/mwp2sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/mW/MD5E-s2378736--11f975dfff144d9b6e8c7fdde7c78056.nii.gz/MD5E-s2378736--11f975dfff144d9b6e8c7fdde7c78056.nii.gz

LMU_3/sub-0025402/ses-1/mri/mwp3sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/jm/MD5E-s2696606--8615024665ae162ff2a8768a14a5cff0.nii.gz/MD5E-s2696606--8615024665ae162ff2a8768a14a5cff0.nii.gz

LMU_3/sub-0025402/ses-1/mri/neuromorphometrics_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025402/ses-1/mri/neuromorphometrics_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/3w/MD5E-s195705--0b667a3a74f62028b1af8a6da79b31d2.nii.gz/MD5E-s195705--0b667a3a74f62028b1af8a6da79b31d2.nii.gz

LMU_3/sub-0025402/ses-1/mri/p0sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/8P/MD5E-s682789--7347b693fd564d4803873bc102920c8a.nii.gz/MD5E-s682789--7347b693fd564d4803873bc102920c8a.nii.gz

LMU_3/sub-0025402/ses-1/mri/p1sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1P/qF/MD5E-s716186--3c1e364de73483c204d7999bb86ab72f.nii.gz/MD5E-s716186--3c1e364de73483c204d7999bb86ab72f.nii.gz

LMU_3/sub-0025402/ses-1/mri/p2sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/8f/MD5E-s449027--94552bf96ed3cc28b6492aad3fbf1dd6.nii.gz/MD5E-s449027--94552bf96ed3cc28b6492aad3fbf1dd6.nii.gz

LMU_3/sub-0025402/ses-1/mri/p3sub-0025402_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025402/ses-1/mri/rp1sub-0025402_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025402/ses-1/mri/rp2sub-0025402_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025402/ses-1/mri/rp3sub-0025402_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025402/ses-1/mri/t_sub-0025402_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025402/ses-1/mri/t_sub-0025402_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/Qm/MD5E-s283--f33205040a3c0790a5545164ff820eb4.mat/MD5E-s283--f33205040a3c0790a5545164ff820eb4.mat

LMU_3/sub-0025402/ses-1/mri/thalamus_sub-0025402_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025402/ses-1/mri/thalamus_sub-0025402_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/fj/MD5E-s14666--1c4bb1600a4a90f9e68ebd6ea96efc29.nii.gz/MD5E-s14666--1c4bb1600a4a90f9e68ebd6ea96efc29.nii.gz

LMU_3/sub-0025402/ses-1/mri/wj_sub-0025402_ses-1_run-1_T1w.nii.gz

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