[DATALAD RUNCMD] Compute BNU_2/sub-0025938/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025938/ses-1/anat/sub-0025938_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025938/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025938/ses-1/label/catROI_sub-0025938_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/64/MD5E-s61341--6d136aca5faa595ffb28d904d709761e.mat/MD5E-s61341--6d136aca5faa595ffb28d904d709761e.mat

BNU_2/sub-0025938/ses-1/label/catROI_sub-0025938_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/Kv/MD5E-s188993--41978c40802165b53c9b9c011067ee53.xml/MD5E-s188993--41978c40802165b53c9b9c011067ee53.xml

BNU_2/sub-0025938/ses-1/label/catROIs_sub-0025938_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/8w/MD5E-s120057--cce7c48c2b9e46000e3685d469272b4f.mat/MD5E-s120057--cce7c48c2b9e46000e3685d469272b4f.mat

BNU_2/sub-0025938/ses-1/label/catROIs_sub-0025938_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/1V/MD5E-s332146--ddd47638ac7d19b7636f6dbb0f50086f.xml/MD5E-s332146--ddd47638ac7d19b7636f6dbb0f50086f.xml

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/5V/MD5E-s149908--238f2a2828f6ac006d0e2fddff01972e.nii.gz/MD5E-s149908--238f2a2828f6ac006d0e2fddff01972e.nii.gz

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/mX/MD5E-s165684--2329d592a30cad19f564ebd9fc47e308.nii.gz/MD5E-s165684--2329d592a30cad19f564ebd9fc47e308.nii.gz

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JF/0q/MD5E-s222533--780f1402e73d840eb0f097529006c120.nii.gz/MD5E-s222533--780f1402e73d840eb0f097529006c120.nii.gz

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025938/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/Kp/MD5E-s245285--c13c104bf17a90e606eec32c18948766.nii.gz/MD5E-s245285--c13c104bf17a90e606eec32c18948766.nii.gz

BNU_2/sub-0025938/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025938/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/vG/MD5E-s19107--4bb4e516fc375742df96cfc5c5795559.nii.gz/MD5E-s19107--4bb4e516fc375742df96cfc5c5795559.nii.gz

BNU_2/sub-0025938/ses-1/mri/aal3_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025938/ses-1/mri/aal3_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/gQ/MD5E-s165727--2dfe18726f9be308dd048c07824fc4df.nii.gz/MD5E-s165727--2dfe18726f9be308dd048c07824fc4df.nii.gz

BNU_2/sub-0025938/ses-1/mri/anatomy3_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025938/ses-1/mri/anatomy3_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/0Q/MD5E-s117854--a99e09edc13fa1e013eee44a9e3328ce.nii.gz/MD5E-s117854--a99e09edc13fa1e013eee44a9e3328ce.nii.gz

BNU_2/sub-0025938/ses-1/mri/anon_misub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/xg/MD5E-s4131233--8f3c5afffaab58d3cbc464b0cab0c8b3.nii.gz/MD5E-s4131233--8f3c5afffaab58d3cbc464b0cab0c8b3.nii.gz

BNU_2/sub-0025938/ses-1/mri/anon_msub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/jF/MD5E-s7122295--4b025894256a4388e48513c1bcb07418.nii.gz/MD5E-s7122295--4b025894256a4388e48513c1bcb07418.nii.gz

BNU_2/sub-0025938/ses-1/mri/cat_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/wg/MD5E-s86971--609eca51630f37a26bd5412fa5547353.nii.gz/MD5E-s86971--609eca51630f37a26bd5412fa5547353.nii.gz

BNU_2/sub-0025938/ses-1/mri/cobra_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025938/ses-1/mri/cobra_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/wv/MD5E-s38669--0933fc09b97e977b80ff9f252f6749a0.nii.gz/MD5E-s38669--0933fc09b97e977b80ff9f252f6749a0.nii.gz

BNU_2/sub-0025938/ses-1/mri/hammers_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025938/ses-1/mri/hammers_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/G9/MD5E-s131695--7141ef4706def6af0743dd9e28ca5403.nii.gz/MD5E-s131695--7141ef4706def6af0743dd9e28ca5403.nii.gz

BNU_2/sub-0025938/ses-1/mri/ibsr_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025938/ses-1/mri/ibsr_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/xf/MD5E-s137879--7aad68567292c94f0390a49e51a7b822.nii.gz/MD5E-s137879--7aad68567292c94f0390a49e51a7b822.nii.gz

BNU_2/sub-0025938/ses-1/mri/it_sub-0025938_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/m9/MD5E-s282--dadb7b8ee529f141ab0868b0bfa0092d.mat/MD5E-s282--dadb7b8ee529f141ab0868b0bfa0092d.mat

BNU_2/sub-0025938/ses-1/mri/it_sub-0025938_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/mp/MD5E-s281--1215c70df5520f1ede3d0e9e231bcca8.mat/MD5E-s281--1215c70df5520f1ede3d0e9e231bcca8.mat

BNU_2/sub-0025938/ses-1/mri/iy_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/77/MD5E-s35885134--3de0ac78176696d11c6f85c50e7e7485.nii.gz/MD5E-s35885134--3de0ac78176696d11c6f85c50e7e7485.nii.gz

BNU_2/sub-0025938/ses-1/mri/julichbrain_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025938/ses-1/mri/julichbrain_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/M0/MD5E-s176079--17ee177c273d759032dd255c834856f0.nii.gz/MD5E-s176079--17ee177c273d759032dd255c834856f0.nii.gz

BNU_2/sub-0025938/ses-1/mri/lpba40_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025938/ses-1/mri/lpba40_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025938/ses-1/mri/m0wp1sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/JM/MD5E-s2576865--45e45ae4e067e47fb089216aea983639.nii.gz/MD5E-s2576865--45e45ae4e067e47fb089216aea983639.nii.gz

BNU_2/sub-0025938/ses-1/mri/m0wp2sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/gF/MD5E-s2289262--295cd47d33910495a3e506532633ba66.nii.gz/MD5E-s2289262--295cd47d33910495a3e506532633ba66.nii.gz

BNU_2/sub-0025938/ses-1/mri/m0wp3sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/jg/MD5E-s2486278--66b9fc80ebaad27f14b6bef9156970ae.nii.gz/MD5E-s2486278--66b9fc80ebaad27f14b6bef9156970ae.nii.gz

BNU_2/sub-0025938/ses-1/mri/mori_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025938/ses-1/mri/mori_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JF/m4/MD5E-s154444--951dbb8dcd0ae7e188c940935cf3c776.nii.gz/MD5E-s154444--951dbb8dcd0ae7e188c940935cf3c776.nii.gz

BNU_2/sub-0025938/ses-1/mri/mwp1sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/kg/MD5E-s2578956--9976e15c69048a71113d6c84109ded30.nii.gz/MD5E-s2578956--9976e15c69048a71113d6c84109ded30.nii.gz

BNU_2/sub-0025938/ses-1/mri/mwp2sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/Pf/MD5E-s2283930--83fc69f0b29204fe0ee34d84efef0953.nii.gz/MD5E-s2283930--83fc69f0b29204fe0ee34d84efef0953.nii.gz

BNU_2/sub-0025938/ses-1/mri/mwp3sub-0025938_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025938/ses-1/mri/neuromorphometrics_sub-0025938_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025938/ses-1/mri/neuromorphometrics_sub-0025938_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025938/ses-1/mri/p0sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/2Z/MD5E-s752749--cba3f2eba7af3fab3f3164c82fb85433.nii.gz/MD5E-s752749--cba3f2eba7af3fab3f3164c82fb85433.nii.gz

BNU_2/sub-0025938/ses-1/mri/p1sub-0025938_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025938/ses-1/mri/p2sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025938/ses-1/mri/p3sub-0025938_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025938/ses-1/mri/rp1sub-0025938_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025938/ses-1/mri/rp2sub-0025938_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025938/ses-1/mri/rp3sub-0025938_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025938/ses-1/mri/t_sub-0025938_ses-1_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025938/ses-1/mri/t_sub-0025938_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025938/ses-1/mri/thalamus_sub-0025938_ses-1_run-1_T1w.csv

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BNU_2/sub-0025938/ses-1/mri/thalamus_sub-0025938_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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