[DATALAD RUNCMD] Compute JHNU/sub-0025608/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025608/ses-1/anat/sub-0025608_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025608/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025608/ses-1/label/catROI_sub-0025608_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/0W/MD5E-s57963--5d5c4572f6a77e6ed73789cda7dc2abf.mat/MD5E-s57963--5d5c4572f6a77e6ed73789cda7dc2abf.mat

JHNU/sub-0025608/ses-1/label/catROI_sub-0025608_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9J/9G/MD5E-s188589--8011ea10befcca70f0bc151faf675b95.xml/MD5E-s188589--8011ea10befcca70f0bc151faf675b95.xml

JHNU/sub-0025608/ses-1/label/catROIs_sub-0025608_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/9k/MD5E-s120033--d21aab28b6ad4d2b4b870094c18c6ade.mat/MD5E-s120033--d21aab28b6ad4d2b4b870094c18c6ade.mat

JHNU/sub-0025608/ses-1/label/catROIs_sub-0025608_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/vk/MD5E-s332116--9a8ba5a1a47208eab681839025d34f08.xml/MD5E-s332116--9a8ba5a1a47208eab681839025d34f08.xml

JHNU/sub-0025608/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025608/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/41/MD5E-s193946--fcbcda063d6c63c9e8266df1446fb911.nii.gz/MD5E-s193946--fcbcda063d6c63c9e8266df1446fb911.nii.gz

JHNU/sub-0025608/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025608/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/5k/MD5E-s217185--bbe1e268425da2a207110e3d9f5d98d5.nii.gz/MD5E-s217185--bbe1e268425da2a207110e3d9f5d98d5.nii.gz

JHNU/sub-0025608/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025608/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/5X/MD5E-s275319--4b07801140b84d98daedebf4dc38f785.nii.gz/MD5E-s275319--4b07801140b84d98daedebf4dc38f785.nii.gz

JHNU/sub-0025608/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025608/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/j1/MD5E-s305939--8b726cb95d5c6973f64f90eb7cebb349.nii.gz/MD5E-s305939--8b726cb95d5c6973f64f90eb7cebb349.nii.gz

JHNU/sub-0025608/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025608/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/5F/MD5E-s25815--d6cb70dd83f57a54c8dabdf9a17c4a77.nii.gz/MD5E-s25815--d6cb70dd83f57a54c8dabdf9a17c4a77.nii.gz

JHNU/sub-0025608/ses-1/mri/aal3_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025608/ses-1/mri/aal3_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/fM/MD5E-s217209--f9677e734b1dc7efeacb644906f28ddb.nii.gz/MD5E-s217209--f9677e734b1dc7efeacb644906f28ddb.nii.gz

JHNU/sub-0025608/ses-1/mri/anatomy3_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025608/ses-1/mri/anatomy3_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/g5/MD5E-s153588--675bdb66d4d84a82541cf316d2fecef0.nii.gz/MD5E-s153588--675bdb66d4d84a82541cf316d2fecef0.nii.gz

JHNU/sub-0025608/ses-1/mri/anon_misub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/k4/MD5E-s4920370--73f3bfe12b61e4a30a634b5d0bb1fc9a.nii.gz/MD5E-s4920370--73f3bfe12b61e4a30a634b5d0bb1fc9a.nii.gz

JHNU/sub-0025608/ses-1/mri/anon_msub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/28/MD5E-s11313259--5cd6ba0aae7c2c4298ba0fcc2bef1385.nii.gz/MD5E-s11313259--5cd6ba0aae7c2c4298ba0fcc2bef1385.nii.gz

JHNU/sub-0025608/ses-1/mri/cat_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/X0/MD5E-s113351--905006ce54b73e8e9d6871ef47a03c15.nii.gz/MD5E-s113351--905006ce54b73e8e9d6871ef47a03c15.nii.gz

JHNU/sub-0025608/ses-1/mri/cobra_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025608/ses-1/mri/cobra_sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/hammers_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025608/ses-1/mri/hammers_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/XQ/MD5E-s168997--324b4d314413d238ed01ceceaadaf66d.nii.gz/MD5E-s168997--324b4d314413d238ed01ceceaadaf66d.nii.gz

JHNU/sub-0025608/ses-1/mri/ibsr_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025608/ses-1/mri/ibsr_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025608/ses-1/mri/it_sub-0025608_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/04/MD5E-s283--1ceed9eff43f11171e876dcff693bc3a.mat/MD5E-s283--1ceed9eff43f11171e876dcff693bc3a.mat

JHNU/sub-0025608/ses-1/mri/it_sub-0025608_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/zF/MD5E-s284--4e5d74fe5903645c115b82d750749803.mat/MD5E-s284--4e5d74fe5903645c115b82d750749803.mat

JHNU/sub-0025608/ses-1/mri/iy_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/m6/MD5E-s47984164--b76ec7530ee7423bb40f3da74911b97c.nii.gz/MD5E-s47984164--b76ec7530ee7423bb40f3da74911b97c.nii.gz

JHNU/sub-0025608/ses-1/mri/julichbrain_sub-0025608_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025608/ses-1/mri/julichbrain_sub-0025608_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Zq/5j/MD5E-s229735--2ccb5dbe6207bb6dc3161a37ed91c444.nii.gz/MD5E-s229735--2ccb5dbe6207bb6dc3161a37ed91c444.nii.gz

JHNU/sub-0025608/ses-1/mri/lpba40_sub-0025608_ses-1_run-1_T1w.csv

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JHNU/sub-0025608/ses-1/mri/lpba40_sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025608/ses-1/mri/m0wp1sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/m0wp2sub-0025608_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025608/ses-1/mri/m0wp3sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/mori_sub-0025608_ses-1_run-1_T1w.csv

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JHNU/sub-0025608/ses-1/mri/mori_sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/mwp1sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/mwp2sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/mwp3sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/neuromorphometrics_sub-0025608_ses-1_run-1_T1w.csv

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JHNU/sub-0025608/ses-1/mri/neuromorphometrics_sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/p0sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/p1sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/p2sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/p3sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/rp1sub-0025608_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025608/ses-1/mri/rp2sub-0025608_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025608/ses-1/mri/rp3sub-0025608_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025608/ses-1/mri/t_sub-0025608_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025608/ses-1/mri/t_sub-0025608_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025608/ses-1/mri/thalamus_sub-0025608_ses-1_run-1_T1w.csv

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JHNU/sub-0025608/ses-1/mri/thalamus_sub-0025608_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025608/ses-1/mri/wj_sub-0025608_ses-1_run-1_T1w.nii.gz

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