[DATALAD RUNCMD] Compute BNU_2/sub-0025942/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025942/ses-1/anat/sub-0025942_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025942/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025942/ses-1/label/catROI_sub-0025942_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/0x/MD5E-s57941--5c0bdfca72a4d0d43a253feef4d0e46e.mat/MD5E-s57941--5c0bdfca72a4d0d43a253feef4d0e46e.mat

BNU_2/sub-0025942/ses-1/label/catROI_sub-0025942_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/2X/MD5E-s188858--2294de5f015c29de0f7d9b007dbcd136.xml/MD5E-s188858--2294de5f015c29de0f7d9b007dbcd136.xml

BNU_2/sub-0025942/ses-1/label/catROIs_sub-0025942_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/pK/MD5E-s120069--15df27d714dc02aeec49ffe109ff8830.mat/MD5E-s120069--15df27d714dc02aeec49ffe109ff8830.mat

BNU_2/sub-0025942/ses-1/label/catROIs_sub-0025942_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/X8/MD5E-s332121--59534199b39ab3991be18d01a891ba9e.xml/MD5E-s332121--59534199b39ab3991be18d01a891ba9e.xml

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/02/MD5E-s154977--d6779ad47d2c9d24480a4e15ce770c6c.nii.gz/MD5E-s154977--d6779ad47d2c9d24480a4e15ce770c6c.nii.gz

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/45/MD5E-s172207--3009a8ef32256e0cfd77a582bce73917.nii.gz/MD5E-s172207--3009a8ef32256e0cfd77a582bce73917.nii.gz

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/pw/MD5E-s231037--57db08fbcae17e1638622b5495f9c9cf.nii.gz/MD5E-s231037--57db08fbcae17e1638622b5495f9c9cf.nii.gz

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025942/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/z4/MD5E-s255260--59bd1d59e81d646a3d459b67247d88e4.nii.gz/MD5E-s255260--59bd1d59e81d646a3d459b67247d88e4.nii.gz

BNU_2/sub-0025942/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025942/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/w8/MD5E-s19803--5a2c3515e2ef4a8d222d5625aa53d4c7.nii.gz/MD5E-s19803--5a2c3515e2ef4a8d222d5625aa53d4c7.nii.gz

BNU_2/sub-0025942/ses-1/mri/aal3_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025942/ses-1/mri/aal3_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/1m/MD5E-s172776--eb8a2b23aea6db84fd44d0dc52768208.nii.gz/MD5E-s172776--eb8a2b23aea6db84fd44d0dc52768208.nii.gz

BNU_2/sub-0025942/ses-1/mri/anatomy3_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025942/ses-1/mri/anatomy3_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/36/MD5E-s124327--c721c842a5a58e17a81048c43f62e623.nii.gz/MD5E-s124327--c721c842a5a58e17a81048c43f62e623.nii.gz

BNU_2/sub-0025942/ses-1/mri/anon_misub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/Gp/MD5E-s4212212--3c7c2540775c75625e04c1cf9e3c0f20.nii.gz/MD5E-s4212212--3c7c2540775c75625e04c1cf9e3c0f20.nii.gz

BNU_2/sub-0025942/ses-1/mri/anon_msub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/jG/MD5E-s10059830--4b6ea8e4ff86060132c6e35e95429b1e.nii.gz/MD5E-s10059830--4b6ea8e4ff86060132c6e35e95429b1e.nii.gz

BNU_2/sub-0025942/ses-1/mri/cat_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/14/QZ/MD5E-s92571--fd721e93d4f4e7147a7bce875d6e96a0.nii.gz/MD5E-s92571--fd721e93d4f4e7147a7bce875d6e96a0.nii.gz

BNU_2/sub-0025942/ses-1/mri/cobra_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025942/ses-1/mri/cobra_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/55/MD5E-s41572--3ad2fcd5af21d29d1b53f147878e3fa6.nii.gz/MD5E-s41572--3ad2fcd5af21d29d1b53f147878e3fa6.nii.gz

BNU_2/sub-0025942/ses-1/mri/hammers_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025942/ses-1/mri/hammers_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/56/MD5E-s138117--30e2626a439e9365bd653f36208a48fa.nii.gz/MD5E-s138117--30e2626a439e9365bd653f36208a48fa.nii.gz

BNU_2/sub-0025942/ses-1/mri/ibsr_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025942/ses-1/mri/ibsr_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/fM/MD5E-s143568--cb7482bb312c5c3094220cff5b5d5e5e.nii.gz/MD5E-s143568--cb7482bb312c5c3094220cff5b5d5e5e.nii.gz

BNU_2/sub-0025942/ses-1/mri/it_sub-0025942_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/Z3/MD5E-s283--630d92ec85ff0eeda93517d404f3a3c3.mat/MD5E-s283--630d92ec85ff0eeda93517d404f3a3c3.mat

BNU_2/sub-0025942/ses-1/mri/it_sub-0025942_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/ZF/MD5E-s284--4a3d581a560a006fbb7b44f67b3c2aa7.mat/MD5E-s284--4a3d581a560a006fbb7b44f67b3c2aa7.mat

BNU_2/sub-0025942/ses-1/mri/iy_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/qk/MD5E-s37279974--443a722a2ba1d54b622c215c2724775f.nii.gz/MD5E-s37279974--443a722a2ba1d54b622c215c2724775f.nii.gz

BNU_2/sub-0025942/ses-1/mri/julichbrain_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025942/ses-1/mri/julichbrain_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/03/MD5E-s186683--f339ae42fb8f2c1a369337a7fa5de510.nii.gz/MD5E-s186683--f339ae42fb8f2c1a369337a7fa5de510.nii.gz

BNU_2/sub-0025942/ses-1/mri/lpba40_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025942/ses-1/mri/lpba40_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/GM/MD5E-s134779--e3722ecac2e3c3c9f997eb6a71a17dc8.nii.gz/MD5E-s134779--e3722ecac2e3c3c9f997eb6a71a17dc8.nii.gz

BNU_2/sub-0025942/ses-1/mri/m0wp1sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/8V/MD5E-s2576336--64165a9ff7c55c6c4c46aef20f1e4711.nii.gz/MD5E-s2576336--64165a9ff7c55c6c4c46aef20f1e4711.nii.gz

BNU_2/sub-0025942/ses-1/mri/m0wp2sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/68/MD5E-s2257380--9796f0524556a5c6d70cbff0835b4ecd.nii.gz/MD5E-s2257380--9796f0524556a5c6d70cbff0835b4ecd.nii.gz

BNU_2/sub-0025942/ses-1/mri/m0wp3sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/92/MD5E-s2496022--6272947a9b48beac08518c9982243aa1.nii.gz/MD5E-s2496022--6272947a9b48beac08518c9982243aa1.nii.gz

BNU_2/sub-0025942/ses-1/mri/mori_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025942/ses-1/mri/mori_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/q2/MD5E-s161686--1cd817469f28ae1b1365d204e21a166d.nii.gz/MD5E-s161686--1cd817469f28ae1b1365d204e21a166d.nii.gz

BNU_2/sub-0025942/ses-1/mri/mwp1sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/33/MD5E-s2576943--de4968a76427b8828e857c01c979538a.nii.gz/MD5E-s2576943--de4968a76427b8828e857c01c979538a.nii.gz

BNU_2/sub-0025942/ses-1/mri/mwp2sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/WV/MD5E-s2254760--cd9c6ad0006838c6b3b87724d52a03f0.nii.gz/MD5E-s2254760--cd9c6ad0006838c6b3b87724d52a03f0.nii.gz

BNU_2/sub-0025942/ses-1/mri/mwp3sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/g8/MD5E-s2492551--371e2fc43f549cb99a3a26d0b40b30ed.nii.gz/MD5E-s2492551--371e2fc43f549cb99a3a26d0b40b30ed.nii.gz

BNU_2/sub-0025942/ses-1/mri/neuromorphometrics_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025942/ses-1/mri/neuromorphometrics_sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/Vx/MD5E-s187163--1b46c85863bbee80fb702d14e7b043fb.nii.gz/MD5E-s187163--1b46c85863bbee80fb702d14e7b043fb.nii.gz

BNU_2/sub-0025942/ses-1/mri/p0sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/1g/MD5E-s785837--5dc8796fed0febd517c186dc3b56c0eb.nii.gz/MD5E-s785837--5dc8796fed0febd517c186dc3b56c0eb.nii.gz

BNU_2/sub-0025942/ses-1/mri/p1sub-0025942_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/W2/MD5E-s798030--2197c8bad83ad50822b30e6940a52dc6.nii.gz/MD5E-s798030--2197c8bad83ad50822b30e6940a52dc6.nii.gz

BNU_2/sub-0025942/ses-1/mri/p2sub-0025942_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/mZ/7G/MD5E-s533501--80ede7b68a71b178259135f43e8778e5.nii.gz/MD5E-s533501--80ede7b68a71b178259135f43e8778e5.nii.gz

BNU_2/sub-0025942/ses-1/mri/p3sub-0025942_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025942/ses-1/mri/rp1sub-0025942_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025942/ses-1/mri/rp2sub-0025942_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025942/ses-1/mri/rp3sub-0025942_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025942/ses-1/mri/t_sub-0025942_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/3v/MD5E-s283--2d1c234354c662f124dbf38a160b891b.mat/MD5E-s283--2d1c234354c662f124dbf38a160b891b.mat

BNU_2/sub-0025942/ses-1/mri/t_sub-0025942_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025942/ses-1/mri/thalamus_sub-0025942_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025942/ses-1/mri/thalamus_sub-0025942_ses-1_run-1_T1w.nii.gz

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