[DATALAD RUNCMD] Compute IACAS/sub-0025476/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025476/ses-2/anat/sub-0025476_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025476/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025476/ses-2/label/catROI_sub-0025476_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/25/MD5E-s57999--d08cbbf67a744793ba41048a74c1597f.mat/MD5E-s57999--d08cbbf67a744793ba41048a74c1597f.mat

IACAS/sub-0025476/ses-2/label/catROI_sub-0025476_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/Pg/MD5E-s188510--5cd23c206670e4e9f74f55d0c341059b.xml/MD5E-s188510--5cd23c206670e4e9f74f55d0c341059b.xml

IACAS/sub-0025476/ses-2/label/catROIs_sub-0025476_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/vK/MD5E-s120221--02864a46438ffe44317ad264a7cd2792.mat/MD5E-s120221--02864a46438ffe44317ad264a7cd2792.mat

IACAS/sub-0025476/ses-2/label/catROIs_sub-0025476_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/W7/MD5E-s332142--0a3925da5659b213a209e54cd002f40a.xml/MD5E-s332142--0a3925da5659b213a209e54cd002f40a.xml

IACAS/sub-0025476/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025476/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/qk/MD5E-s171736--88aecb90b7dd47743c686305f0a8e094.nii.gz/MD5E-s171736--88aecb90b7dd47743c686305f0a8e094.nii.gz

IACAS/sub-0025476/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025476/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/ww/MD5E-s192505--5e10741be8baa6b0ce50b162a923ed50.nii.gz/MD5E-s192505--5e10741be8baa6b0ce50b162a923ed50.nii.gz

IACAS/sub-0025476/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025476/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/4p/MD5E-s258012--8d1f1128d5ddadcbd56fab2304af0ba4.nii.gz/MD5E-s258012--8d1f1128d5ddadcbd56fab2304af0ba4.nii.gz

IACAS/sub-0025476/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025476/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/18/MD5E-s287905--297f2d88e27d082791907a4b94242409.nii.gz/MD5E-s287905--297f2d88e27d082791907a4b94242409.nii.gz

IACAS/sub-0025476/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025476/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/2G/MD5E-s25838--30ef85b05bec6ad53985bd130139b302.nii.gz/MD5E-s25838--30ef85b05bec6ad53985bd130139b302.nii.gz

IACAS/sub-0025476/ses-2/mri/aal3_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025476/ses-2/mri/aal3_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/0Z/MD5E-s191871--b47231799fc5a43a5fdf9109868743c1.nii.gz/MD5E-s191871--b47231799fc5a43a5fdf9109868743c1.nii.gz

IACAS/sub-0025476/ses-2/mri/anatomy3_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025476/ses-2/mri/anatomy3_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/v6/MD5E-s143086--f3ce91dfcafdc1bcb2e8e7901cf3e6d9.nii.gz/MD5E-s143086--f3ce91dfcafdc1bcb2e8e7901cf3e6d9.nii.gz

IACAS/sub-0025476/ses-2/mri/anon_misub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/WK/MD5E-s7950095--d534b4c605f97fa194ca4c18e2d05dfa.nii.gz/MD5E-s7950095--d534b4c605f97fa194ca4c18e2d05dfa.nii.gz

IACAS/sub-0025476/ses-2/mri/anon_msub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/q9/MD5E-s7633187--a52796c5efce7252eb8103852368b950.nii.gz/MD5E-s7633187--a52796c5efce7252eb8103852368b950.nii.gz

IACAS/sub-0025476/ses-2/mri/cat_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025476/ses-2/mri/cobra_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025476/ses-2/mri/cobra_sub-0025476_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xV/m1/MD5E-s48290--bb9f5f2b7dae1d7080bb388823bb1283.nii.gz/MD5E-s48290--bb9f5f2b7dae1d7080bb388823bb1283.nii.gz

IACAS/sub-0025476/ses-2/mri/hammers_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025476/ses-2/mri/hammers_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/ibsr_sub-0025476_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025476/ses-2/mri/ibsr_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/it_sub-0025476_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/XM/MD5E-s284--05ae5e57b8f1f028f3cd1734e74fa9a1.mat/MD5E-s284--05ae5e57b8f1f028f3cd1734e74fa9a1.mat

IACAS/sub-0025476/ses-2/mri/it_sub-0025476_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/MG/MD5E-s284--5bb7bc32510aac840da89459810b6a6a.mat/MD5E-s284--5bb7bc32510aac840da89459810b6a6a.mat

IACAS/sub-0025476/ses-2/mri/iy_sub-0025476_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/Jx/MD5E-s47136462--fb0db6021ae0bcf8cbf8d3e5ee052457.nii.gz/MD5E-s47136462--fb0db6021ae0bcf8cbf8d3e5ee052457.nii.gz

IACAS/sub-0025476/ses-2/mri/julichbrain_sub-0025476_ses-2_run-1_T1w.csv

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IACAS/sub-0025476/ses-2/mri/julichbrain_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/lpba40_sub-0025476_ses-2_run-1_T1w.csv

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IACAS/sub-0025476/ses-2/mri/lpba40_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/m0wp1sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/m0wp2sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/m0wp3sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/mori_sub-0025476_ses-2_run-1_T1w.csv

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IACAS/sub-0025476/ses-2/mri/mori_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/mwp1sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/mwp2sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/mwp3sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/neuromorphometrics_sub-0025476_ses-2_run-1_T1w.csv

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IACAS/sub-0025476/ses-2/mri/neuromorphometrics_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/p0sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/p1sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/p2sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/p3sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/rp1sub-0025476_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025476/ses-2/mri/rp2sub-0025476_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025476/ses-2/mri/rp3sub-0025476_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025476/ses-2/mri/t_sub-0025476_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025476/ses-2/mri/t_sub-0025476_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025476/ses-2/mri/thalamus_sub-0025476_ses-2_run-1_T1w.csv

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IACAS/sub-0025476/ses-2/mri/thalamus_sub-0025476_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025476/ses-2/mri/wj_sub-0025476_ses-2_run-1_T1w.nii.gz

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