[DATALAD RUNCMD] Compute JHNU/sub-0025603/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025603/ses-1/anat/sub-0025603_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025603/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025603/ses-1/label/catROI_sub-0025603_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/6f/MD5E-s57789--9b256c4d28ba6f9c41d9a975e0503747.mat/MD5E-s57789--9b256c4d28ba6f9c41d9a975e0503747.mat

JHNU/sub-0025603/ses-1/label/catROI_sub-0025603_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/jw/MD5E-s188894--eb9f2f57e3f305a9bd57a0091c14e2b2.xml/MD5E-s188894--eb9f2f57e3f305a9bd57a0091c14e2b2.xml

JHNU/sub-0025603/ses-1/label/catROIs_sub-0025603_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/g4/MD5E-s120013--6fe4d5276c47757ef33879f92939f2ba.mat/MD5E-s120013--6fe4d5276c47757ef33879f92939f2ba.mat

JHNU/sub-0025603/ses-1/label/catROIs_sub-0025603_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/V8/MD5E-s332140--077706eb34c64a343252e8354182d647.xml/MD5E-s332140--077706eb34c64a343252e8354182d647.xml

JHNU/sub-0025603/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025603/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/2W/MD5E-s178095--234650cc8b882dff17e2af1839e406ca.nii.gz/MD5E-s178095--234650cc8b882dff17e2af1839e406ca.nii.gz

JHNU/sub-0025603/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025603/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/1X/MD5E-s199251--4b033b449a9a0e215508c144697d824f.nii.gz/MD5E-s199251--4b033b449a9a0e215508c144697d824f.nii.gz

JHNU/sub-0025603/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025603/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/7m/MD5E-s252922--9948bc2622f218d8c5f3d6b184f3b967.nii.gz/MD5E-s252922--9948bc2622f218d8c5f3d6b184f3b967.nii.gz

JHNU/sub-0025603/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025603/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/Kw/MD5E-s280859--5f377427dd0346abd1ea44ed0219a9c8.nii.gz/MD5E-s280859--5f377427dd0346abd1ea44ed0219a9c8.nii.gz

JHNU/sub-0025603/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025603/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/F7/MD5E-s26006--e3a64b631d7cba4e1691f4b1f4902a20.nii.gz/MD5E-s26006--e3a64b631d7cba4e1691f4b1f4902a20.nii.gz

JHNU/sub-0025603/ses-1/mri/aal3_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025603/ses-1/mri/aal3_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/08/MD5E-s202717--1fef4157ee9789ce349ab8e7c063de96.nii.gz/MD5E-s202717--1fef4157ee9789ce349ab8e7c063de96.nii.gz

JHNU/sub-0025603/ses-1/mri/anatomy3_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025603/ses-1/mri/anatomy3_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/qk/MD5E-s143831--bc42fced5ed1e115af64e5f86e57703d.nii.gz/MD5E-s143831--bc42fced5ed1e115af64e5f86e57703d.nii.gz

JHNU/sub-0025603/ses-1/mri/anon_misub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/wz/MD5E-s4662289--f883219a061b7f0e2ec21f7c4b869000.nii.gz/MD5E-s4662289--f883219a061b7f0e2ec21f7c4b869000.nii.gz

JHNU/sub-0025603/ses-1/mri/anon_msub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/MG/MD5E-s10806391--257aef4c5d6a199f906937dcfc7f9951.nii.gz/MD5E-s10806391--257aef4c5d6a199f906937dcfc7f9951.nii.gz

JHNU/sub-0025603/ses-1/mri/cat_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/x5/MD5E-s108140--38be235849ed35c2c7840c3a032ae136.nii.gz/MD5E-s108140--38be235849ed35c2c7840c3a032ae136.nii.gz

JHNU/sub-0025603/ses-1/mri/cobra_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025603/ses-1/mri/cobra_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/mk/MD5E-s50415--afc21ab20dfacd65cea08f30cafe1a8a.nii.gz/MD5E-s50415--afc21ab20dfacd65cea08f30cafe1a8a.nii.gz

JHNU/sub-0025603/ses-1/mri/hammers_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025603/ses-1/mri/hammers_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/FG/MD5E-s158637--180ba4ba56a2b8503171980505128fc3.nii.gz/MD5E-s158637--180ba4ba56a2b8503171980505128fc3.nii.gz

JHNU/sub-0025603/ses-1/mri/ibsr_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025603/ses-1/mri/ibsr_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/6j/MD5E-s163909--6c45e9fc38ad9b780bd73f758ca240b6.nii.gz/MD5E-s163909--6c45e9fc38ad9b780bd73f758ca240b6.nii.gz

JHNU/sub-0025603/ses-1/mri/it_sub-0025603_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/03/MD5E-s283--e8a39fb441b367b97aa9ca9dd7bb7944.mat/MD5E-s283--e8a39fb441b367b97aa9ca9dd7bb7944.mat

JHNU/sub-0025603/ses-1/mri/it_sub-0025603_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/7W/MD5E-s283--879f6417489f8cf96fc3ae843e57ec22.mat/MD5E-s283--879f6417489f8cf96fc3ae843e57ec22.mat

JHNU/sub-0025603/ses-1/mri/iy_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/K1/MD5E-s44989650--10a4a12178d5d0787ce3640ddac55a55.nii.gz/MD5E-s44989650--10a4a12178d5d0787ce3640ddac55a55.nii.gz

JHNU/sub-0025603/ses-1/mri/julichbrain_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

JHNU/sub-0025603/ses-1/mri/julichbrain_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/23/Zx/MD5E-s213525--febbf86d0c1366d7c307535c3c5cee9f.nii.gz/MD5E-s213525--febbf86d0c1366d7c307535c3c5cee9f.nii.gz

JHNU/sub-0025603/ses-1/mri/lpba40_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/lpba40_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/4m/MD5E-s155035--fa67d62d068b30b62df3a4f09c3875db.nii.gz/MD5E-s155035--fa67d62d068b30b62df3a4f09c3875db.nii.gz

JHNU/sub-0025603/ses-1/mri/m0wp1sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/m0wp2sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/GK/MD5E-s2281516--df8ceedaecf506110ac2c07379f3436d.nii.gz/MD5E-s2281516--df8ceedaecf506110ac2c07379f3436d.nii.gz

JHNU/sub-0025603/ses-1/mri/m0wp3sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/mori_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

JHNU/sub-0025603/ses-1/mri/mori_sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/mwp1sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/mwp2sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/mwp3sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/neuromorphometrics_sub-0025603_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/neuromorphometrics_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/p0sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/p1sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/p2sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/p3sub-0025603_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025603/ses-1/mri/rp1sub-0025603_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025603/ses-1/mri/rp2sub-0025603_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025603/ses-1/mri/rp3sub-0025603_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025603/ses-1/mri/t_sub-0025603_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025603/ses-1/mri/t_sub-0025603_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025603/ses-1/mri/thalamus_sub-0025603_ses-1_run-1_T1w.csv

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JHNU/sub-0025603/ses-1/mri/thalamus_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025603/ses-1/mri/wj_sub-0025603_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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