[DATALAD RUNCMD] Compute SWU_1/sub-0027218/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027218/ses-1/anat/sub-0027218_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027218/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027218/ses-1/label/catROI_sub-0027218_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zM/56/MD5E-s58959--f657facab32eb92ded30edbb9fe2c697.mat/MD5E-s58959--f657facab32eb92ded30edbb9fe2c697.mat

SWU_1/sub-0027218/ses-1/label/catROI_sub-0027218_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M6/8X/MD5E-s188654--1dd77c3010107382321fe5d75ed9da1f.xml/MD5E-s188654--1dd77c3010107382321fe5d75ed9da1f.xml

SWU_1/sub-0027218/ses-1/label/catROI_sub-0027218_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/Gj/MD5E-s58904--532f78029c3f062ba8764508ec2ab53c.mat/MD5E-s58904--532f78029c3f062ba8764508ec2ab53c.mat

SWU_1/sub-0027218/ses-1/label/catROI_sub-0027218_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/5k/MD5E-s188621--8e140aa9eb8e9f17798c9f7c942bbd2b.xml/MD5E-s188621--8e140aa9eb8e9f17798c9f7c942bbd2b.xml

SWU_1/sub-0027218/ses-1/label/catROIs_sub-0027218_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fk/vk/MD5E-s120065--d615f3335f4cadab0b4c0debf41a21b9.mat/MD5E-s120065--d615f3335f4cadab0b4c0debf41a21b9.mat

SWU_1/sub-0027218/ses-1/label/catROIs_sub-0027218_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P6/6F/MD5E-s332083--fc9100a9387e72206072558b6e9f615e.xml/MD5E-s332083--fc9100a9387e72206072558b6e9f615e.xml

SWU_1/sub-0027218/ses-1/label/catROIs_sub-0027218_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/pv/MD5E-s120142--4bded105a0fac3dc230d2bc38e334710.mat/MD5E-s120142--4bded105a0fac3dc230d2bc38e334710.mat

SWU_1/sub-0027218/ses-1/label/catROIs_sub-0027218_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/fZ/MD5E-s332069--8269c2fd04115064bd92bef0db28bc7b.xml/MD5E-s332069--8269c2fd04115064bd92bef0db28bc7b.xml

SWU_1/sub-0027218/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5M/XZ/MD5E-s198963--e2dbfcf83253a2128be2bc68ac49322e.nii.gz/MD5E-s198963--e2dbfcf83253a2128be2bc68ac49322e.nii.gz

SWU_1/sub-0027218/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027218/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GQ/m4/MD5E-s225934--1655789fc9e0e5f789acf443c2538f1e.nii.gz/MD5E-s225934--1655789fc9e0e5f789acf443c2538f1e.nii.gz

SWU_1/sub-0027218/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/V6/MD5E-s225233--0fb36df4c7b531c6874f908d4f32c88b.nii.gz/MD5E-s225233--0fb36df4c7b531c6874f908d4f32c88b.nii.gz

SWU_1/sub-0027218/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JX/40/MD5E-s300854--b451d352d0365dfe4221bcff72cabb35.nii.gz/MD5E-s300854--b451d352d0365dfe4221bcff72cabb35.nii.gz

SWU_1/sub-0027218/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027218/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/M9/MD5E-s334566--1c0150a68f112b98b522fad7e75b2b82.nii.gz/MD5E-s334566--1c0150a68f112b98b522fad7e75b2b82.nii.gz

SWU_1/sub-0027218/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KX/MK/MD5E-s28915--a3fc7f9afbe6788be0a6d1115974427d.nii.gz/MD5E-s28915--a3fc7f9afbe6788be0a6d1115974427d.nii.gz

SWU_1/sub-0027218/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/Vq/MD5E-s28772--cfb19ccf9ca99f97e82106d764136af6.nii.gz/MD5E-s28772--cfb19ccf9ca99f97e82106d764136af6.nii.gz

SWU_1/sub-0027218/ses-1/mri/aal3_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2X/Gg/MD5E-s230007--a56001425cc3944f0d62bfe2c7626f47.nii.gz/MD5E-s230007--a56001425cc3944f0d62bfe2c7626f47.nii.gz

SWU_1/sub-0027218/ses-1/mri/aal3_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/0Z/MD5E-s228870--55d2bfef94d2af5efe292365ada704f1.nii.gz/MD5E-s228870--55d2bfef94d2af5efe292365ada704f1.nii.gz

SWU_1/sub-0027218/ses-1/mri/anatomy3_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/anatomy3_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/fj/MD5E-s165112--1cae33c9b0002a6be48b072ba7589ed6.nii.gz/MD5E-s165112--1cae33c9b0002a6be48b072ba7589ed6.nii.gz

SWU_1/sub-0027218/ses-1/mri/anon_misub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/anon_misub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/anon_msub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/anon_msub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/cat_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/cat_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027218/ses-1/mri/cobra_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/cobra_sub-0027218_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027218/ses-1/mri/hammers_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/hammers_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/ibsr_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/ibsr_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/it_sub-0027218_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VP/9M/MD5E-s282--a8caec318ad83d791429ded4d0865f8b.mat/MD5E-s282--a8caec318ad83d791429ded4d0865f8b.mat

SWU_1/sub-0027218/ses-1/mri/it_sub-0027218_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/it_sub-0027218_ses-1_run-2_T1w_affine_reorient.mat

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SWU_1/sub-0027218/ses-1/mri/it_sub-0027218_ses-1_run-2_T1w_rigid_reorient.mat

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SWU_1/sub-0027218/ses-1/mri/iy_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/iy_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/julichbrain_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/julichbrain_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/lpba40_sub-0027218_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027218/ses-1/mri/lpba40_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp1sub-0027218_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp1sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp2sub-0027218_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp2sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp3sub-0027218_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/m0wp3sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/mori_sub-0027218_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/mori_sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/mwp1sub-0027218_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/mwp1sub-0027218_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027218/ses-1/mri/mwp2sub-0027218_ses-1_run-1_T1w.nii.gz

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