[DATALAD RUNCMD] Compute BNU_2/sub-0025950/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025950/ses-2/anat/sub-0025950_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025950/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025950/ses-2/label/catROI_sub-0025950_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/60/MD5E-s61206--6f625ccbc8fdf3d04559e1f12fe7c6cf.mat/MD5E-s61206--6f625ccbc8fdf3d04559e1f12fe7c6cf.mat

BNU_2/sub-0025950/ses-2/label/catROI_sub-0025950_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/gm/MD5E-s188850--21a098c09b2adac5d80e97d0da55ec1e.xml/MD5E-s188850--21a098c09b2adac5d80e97d0da55ec1e.xml

BNU_2/sub-0025950/ses-2/label/catROIs_sub-0025950_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/zj/MD5E-s120077--9aff35b5ed383d8b8a87ac4973b92d18.mat/MD5E-s120077--9aff35b5ed383d8b8a87ac4973b92d18.mat

BNU_2/sub-0025950/ses-2/label/catROIs_sub-0025950_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/Xq/MD5E-s332182--ac5ad841a6ed5e21bb1428feac83009c.xml/MD5E-s332182--ac5ad841a6ed5e21bb1428feac83009c.xml

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/91/MD5E-s162963--260ff1f7dd5f19dc4f47d1a2304b3c66.nii.gz/MD5E-s162963--260ff1f7dd5f19dc4f47d1a2304b3c66.nii.gz

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/98/MD5E-s180831--744d4cb308e145175ee91594f0d31cbc.nii.gz/MD5E-s180831--744d4cb308e145175ee91594f0d31cbc.nii.gz

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/vJ/MD5E-s245969--60e7010e4c47597a6c64af42ef4f9459.nii.gz/MD5E-s245969--60e7010e4c47597a6c64af42ef4f9459.nii.gz

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025950/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/76/MD5E-s271970--21391f3d16b86b1563e6f0b5597d4f5d.nii.gz/MD5E-s271970--21391f3d16b86b1563e6f0b5597d4f5d.nii.gz

BNU_2/sub-0025950/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025950/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/9M/MD5E-s24788--f2624eca66ee8673add9730fd95e7065.nii.gz/MD5E-s24788--f2624eca66ee8673add9730fd95e7065.nii.gz

BNU_2/sub-0025950/ses-2/mri/aal3_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025950/ses-2/mri/aal3_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/2G/MD5E-s181926--de16a446fd86ac79df02977a93c1b915.nii.gz/MD5E-s181926--de16a446fd86ac79df02977a93c1b915.nii.gz

BNU_2/sub-0025950/ses-2/mri/anatomy3_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025950/ses-2/mri/anatomy3_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/Z8/MD5E-s132147--b5117fbc9f0e378636ed2bdb1cef6e74.nii.gz/MD5E-s132147--b5117fbc9f0e378636ed2bdb1cef6e74.nii.gz

BNU_2/sub-0025950/ses-2/mri/anon_misub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/6X/MD5E-s4287319--cc8aca45f13a82b94f2cb601fb2053c5.nii.gz/MD5E-s4287319--cc8aca45f13a82b94f2cb601fb2053c5.nii.gz

BNU_2/sub-0025950/ses-2/mri/anon_msub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/pX/MD5E-s10444262--6237b5fab0168a7b237326abde8f540d.nii.gz/MD5E-s10444262--6237b5fab0168a7b237326abde8f540d.nii.gz

BNU_2/sub-0025950/ses-2/mri/cat_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/KG/MD5E-s99752--1c9779f7f059d453b60f17bcc39b72c3.nii.gz/MD5E-s99752--1c9779f7f059d453b60f17bcc39b72c3.nii.gz

BNU_2/sub-0025950/ses-2/mri/cobra_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025950/ses-2/mri/cobra_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/G0/MD5E-s47146--8251bc83a587eefac13a7dbc368bd88c.nii.gz/MD5E-s47146--8251bc83a587eefac13a7dbc368bd88c.nii.gz

BNU_2/sub-0025950/ses-2/mri/hammers_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025950/ses-2/mri/hammers_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/97/MD5E-s146221--6add4d0048b432ba43a65bf13169ba2e.nii.gz/MD5E-s146221--6add4d0048b432ba43a65bf13169ba2e.nii.gz

BNU_2/sub-0025950/ses-2/mri/ibsr_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025950/ses-2/mri/ibsr_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/Z8/MD5E-s152553--10da6c5dd76b98c57d034e71d426611e.nii.gz/MD5E-s152553--10da6c5dd76b98c57d034e71d426611e.nii.gz

BNU_2/sub-0025950/ses-2/mri/it_sub-0025950_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/Vz/MD5E-s284--5065378126d0fc9fdeba68871692fbea.mat/MD5E-s284--5065378126d0fc9fdeba68871692fbea.mat

BNU_2/sub-0025950/ses-2/mri/it_sub-0025950_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/J7/MD5E-s284--8fc14e53ddd82bf979f7cb96d8bc60d7.mat/MD5E-s284--8fc14e53ddd82bf979f7cb96d8bc60d7.mat

BNU_2/sub-0025950/ses-2/mri/iy_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/ZF/MD5E-s44539572--72b721606b3e8da2aaac469fc4bcf134.nii.gz/MD5E-s44539572--72b721606b3e8da2aaac469fc4bcf134.nii.gz

BNU_2/sub-0025950/ses-2/mri/julichbrain_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025950/ses-2/mri/julichbrain_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/1k/MD5E-s194945--5fcbf08af5bc73f288f4c9726674df7d.nii.gz/MD5E-s194945--5fcbf08af5bc73f288f4c9726674df7d.nii.gz

BNU_2/sub-0025950/ses-2/mri/lpba40_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025950/ses-2/mri/lpba40_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/39/MD5E-s142721--5fbdfe0200b4ac5237be50f252295dbf.nii.gz/MD5E-s142721--5fbdfe0200b4ac5237be50f252295dbf.nii.gz

BNU_2/sub-0025950/ses-2/mri/m0wp1sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/Jv/MD5E-s2587683--d5868cc72bd94b3bb1edb4591488601c.nii.gz/MD5E-s2587683--d5868cc72bd94b3bb1edb4591488601c.nii.gz

BNU_2/sub-0025950/ses-2/mri/m0wp2sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/Pq/MD5E-s2296236--673d26cecba5c60d4325b96c9bafa02d.nii.gz/MD5E-s2296236--673d26cecba5c60d4325b96c9bafa02d.nii.gz

BNU_2/sub-0025950/ses-2/mri/m0wp3sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/v0/MD5E-s2556510--1aca51824c9e06c67989c430122cd2e5.nii.gz/MD5E-s2556510--1aca51824c9e06c67989c430122cd2e5.nii.gz

BNU_2/sub-0025950/ses-2/mri/mori_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025950/ses-2/mri/mori_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/PK/MD5E-s170090--3fc3f7bb560b2c474b3df551639c4d10.nii.gz/MD5E-s170090--3fc3f7bb560b2c474b3df551639c4d10.nii.gz

BNU_2/sub-0025950/ses-2/mri/mwp1sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/Z4/MD5E-s2595423--67d4ba2af0a5145874a5133d2e772057.nii.gz/MD5E-s2595423--67d4ba2af0a5145874a5133d2e772057.nii.gz

BNU_2/sub-0025950/ses-2/mri/mwp2sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/35/MD5E-s2297995--72d4ac8573e77e98ba82239ca65ef661.nii.gz/MD5E-s2297995--72d4ac8573e77e98ba82239ca65ef661.nii.gz

BNU_2/sub-0025950/ses-2/mri/mwp3sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/8P/MD5E-s2555998--192d8febc605acbeeee9a877f2d4cf73.nii.gz/MD5E-s2555998--192d8febc605acbeeee9a877f2d4cf73.nii.gz

BNU_2/sub-0025950/ses-2/mri/neuromorphometrics_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025950/ses-2/mri/neuromorphometrics_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025950/ses-2/mri/p0sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/j9/MD5E-s614995--2a515dd09ac589a48b61905b0ec5da6c.nii.gz/MD5E-s614995--2a515dd09ac589a48b61905b0ec5da6c.nii.gz

BNU_2/sub-0025950/ses-2/mri/p1sub-0025950_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025950/ses-2/mri/p2sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/gQ/MD5E-s420626--ed297f5161f62c755ae0630b50e97484.nii.gz/MD5E-s420626--ed297f5161f62c755ae0630b50e97484.nii.gz

BNU_2/sub-0025950/ses-2/mri/p3sub-0025950_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025950/ses-2/mri/rp1sub-0025950_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025950/ses-2/mri/rp2sub-0025950_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025950/ses-2/mri/rp3sub-0025950_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025950/ses-2/mri/t_sub-0025950_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025950/ses-2/mri/t_sub-0025950_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025950/ses-2/mri/thalamus_sub-0025950_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025950/ses-2/mri/thalamus_sub-0025950_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025950/ses-2/mri/wj_sub-0025950_ses-2_run-1_T1w.nii.gz

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