[DATALAD RUNCMD] Compute LMU_3/sub-0025421/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025421/ses-1/anat/sub-0025421_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025421/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025421/ses-1/label/catROI_sub-0025421_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/62/MD5E-s61332--ffb194ed1890aef38631de7172447f62.mat/MD5E-s61332--ffb194ed1890aef38631de7172447f62.mat

LMU_3/sub-0025421/ses-1/label/catROI_sub-0025421_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/mw/MD5E-s189409--cce7c278a4939c850dd9afc7c397c487.xml/MD5E-s189409--cce7c278a4939c850dd9afc7c397c487.xml

LMU_3/sub-0025421/ses-1/label/catROIs_sub-0025421_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/3M/MD5E-s120190--d80d07b72d67dc462a60e39129368d00.mat/MD5E-s120190--d80d07b72d67dc462a60e39129368d00.mat

LMU_3/sub-0025421/ses-1/label/catROIs_sub-0025421_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/2M/MD5E-s332124--dc2d547adcebb94a1abf77f3cbab50a6.xml/MD5E-s332124--dc2d547adcebb94a1abf77f3cbab50a6.xml

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/mM/MD5E-s145600--d6d36f0033a5f9ec391882fe0f8f8bed.nii.gz/MD5E-s145600--d6d36f0033a5f9ec391882fe0f8f8bed.nii.gz

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/P5/MD5E-s165538--941f87caea7c7d4f4228917014805eb7.nii.gz/MD5E-s165538--941f87caea7c7d4f4228917014805eb7.nii.gz

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/Mw/MD5E-s222082--1aa7c99084ebd46e72c9f1fd22d642ce.nii.gz/MD5E-s222082--1aa7c99084ebd46e72c9f1fd22d642ce.nii.gz

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025421/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/WW/MD5E-s246452--0a911a1114b1d5772fc8b2b75f8d1334.nii.gz/MD5E-s246452--0a911a1114b1d5772fc8b2b75f8d1334.nii.gz

LMU_3/sub-0025421/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025421/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/w0/MD5E-s21494--092268369695cff66d8179f92c3da267.nii.gz/MD5E-s21494--092268369695cff66d8179f92c3da267.nii.gz

LMU_3/sub-0025421/ses-1/mri/aal3_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025421/ses-1/mri/aal3_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/11/MD5E-s167635--bdedad4565f3baa341b4072c21d218ed.nii.gz/MD5E-s167635--bdedad4565f3baa341b4072c21d218ed.nii.gz

LMU_3/sub-0025421/ses-1/mri/anatomy3_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025421/ses-1/mri/anatomy3_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/v6/MD5E-s121158--2730b5b933ee552967a89e07754d27ef.nii.gz/MD5E-s121158--2730b5b933ee552967a89e07754d27ef.nii.gz

LMU_3/sub-0025421/ses-1/mri/anon_misub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/FP/MD5E-s8611217--a9845ffd7f33b552fae9f80b46b1a433.nii.gz/MD5E-s8611217--a9845ffd7f33b552fae9f80b46b1a433.nii.gz

LMU_3/sub-0025421/ses-1/mri/anon_msub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kw/6q/MD5E-s9203698--b2b4fc83e2007f5bc367c8389b2b7dbc.nii.gz/MD5E-s9203698--b2b4fc83e2007f5bc367c8389b2b7dbc.nii.gz

LMU_3/sub-0025421/ses-1/mri/cat_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/Jp/MD5E-s93333--f5791c605341e7d465e081033f0b3def.nii.gz/MD5E-s93333--f5791c605341e7d465e081033f0b3def.nii.gz

LMU_3/sub-0025421/ses-1/mri/cobra_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025421/ses-1/mri/cobra_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/4j/MD5E-s41808--d2d2cca8adba41322a0836b73c628e3f.nii.gz/MD5E-s41808--d2d2cca8adba41322a0836b73c628e3f.nii.gz

LMU_3/sub-0025421/ses-1/mri/hammers_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025421/ses-1/mri/hammers_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/M9/MD5E-s132156--442cf697435627a2cbfcd5119cb07620.nii.gz/MD5E-s132156--442cf697435627a2cbfcd5119cb07620.nii.gz

LMU_3/sub-0025421/ses-1/mri/ibsr_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025421/ses-1/mri/ibsr_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/wX/MD5E-s138477--f9c5f6545b70cbfcd7f679cee3dfc917.nii.gz/MD5E-s138477--f9c5f6545b70cbfcd7f679cee3dfc917.nii.gz

LMU_3/sub-0025421/ses-1/mri/it_sub-0025421_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/Q6/MD5E-s283--04b5dabc78e79bfb349cc69d34dc2ddb.mat/MD5E-s283--04b5dabc78e79bfb349cc69d34dc2ddb.mat

LMU_3/sub-0025421/ses-1/mri/it_sub-0025421_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/1K/MD5E-s283--d5ca9fa1bb77ee58486030f1319096f6.mat/MD5E-s283--d5ca9fa1bb77ee58486030f1319096f6.mat

LMU_3/sub-0025421/ses-1/mri/iy_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/86/MD5E-s39969283--ea9e893ae039b726ea68a70bc8e18016.nii.gz/MD5E-s39969283--ea9e893ae039b726ea68a70bc8e18016.nii.gz

LMU_3/sub-0025421/ses-1/mri/julichbrain_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025421/ses-1/mri/julichbrain_sub-0025421_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/35/m0/MD5E-s178244--a5577e1f8cea552869f8f641e48ba45d.nii.gz/MD5E-s178244--a5577e1f8cea552869f8f641e48ba45d.nii.gz

LMU_3/sub-0025421/ses-1/mri/lpba40_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025421/ses-1/mri/lpba40_sub-0025421_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025421/ses-1/mri/m0wp1sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/M3/MD5E-s2606227--c465ac14e81c65b423d5b2cbbca809d1.nii.gz/MD5E-s2606227--c465ac14e81c65b423d5b2cbbca809d1.nii.gz

LMU_3/sub-0025421/ses-1/mri/m0wp2sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/GP/MD5E-s2298109--c9d37ba02b85fd5d1e9daad742ac69a6.nii.gz/MD5E-s2298109--c9d37ba02b85fd5d1e9daad742ac69a6.nii.gz

LMU_3/sub-0025421/ses-1/mri/m0wp3sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/m9/MD5E-s2597312--9a8f985784ae5402087c926126f576a3.nii.gz/MD5E-s2597312--9a8f985784ae5402087c926126f576a3.nii.gz

LMU_3/sub-0025421/ses-1/mri/mori_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025421/ses-1/mri/mori_sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/g9/MD5E-s152818--47ffb09379f489f2e2607e11173f254e.nii.gz/MD5E-s152818--47ffb09379f489f2e2607e11173f254e.nii.gz

LMU_3/sub-0025421/ses-1/mri/mwp1sub-0025421_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/kK/9q/MD5E-s2617136--9f4157b989defa667f2055c3cd5e5e8c.nii.gz/MD5E-s2617136--9f4157b989defa667f2055c3cd5e5e8c.nii.gz

LMU_3/sub-0025421/ses-1/mri/mwp2sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/Gv/MD5E-s2304792--dc0e3e634338a71caef81cdc6281a391.nii.gz/MD5E-s2304792--dc0e3e634338a71caef81cdc6281a391.nii.gz

LMU_3/sub-0025421/ses-1/mri/mwp3sub-0025421_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025421/ses-1/mri/neuromorphometrics_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025421/ses-1/mri/neuromorphometrics_sub-0025421_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025421/ses-1/mri/p0sub-0025421_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/8X/MD5E-s578431--d756e6fc0eaafe0e7da4095f61583cd1.nii.gz/MD5E-s578431--d756e6fc0eaafe0e7da4095f61583cd1.nii.gz

LMU_3/sub-0025421/ses-1/mri/p1sub-0025421_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025421/ses-1/mri/p2sub-0025421_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/JM/w2/MD5E-s398617--d2a69164b0a53ad1fcfd9caa225e9537.nii.gz/MD5E-s398617--d2a69164b0a53ad1fcfd9caa225e9537.nii.gz

LMU_3/sub-0025421/ses-1/mri/p3sub-0025421_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025421/ses-1/mri/rp1sub-0025421_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025421/ses-1/mri/rp2sub-0025421_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025421/ses-1/mri/rp3sub-0025421_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025421/ses-1/mri/t_sub-0025421_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/p4/MD5E-s285--20e4a787901c99f74ad8c7cafdeff993.mat/MD5E-s285--20e4a787901c99f74ad8c7cafdeff993.mat

LMU_3/sub-0025421/ses-1/mri/t_sub-0025421_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025421/ses-1/mri/thalamus_sub-0025421_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025421/ses-1/mri/thalamus_sub-0025421_ses-1_run-1_T1w.nii.gz

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