[DATALAD RUNCMD] Compute LMU_3/sub-0025426/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025426/ses-2/anat/sub-0025426_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025426/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025426/ses-2/label/catROI_sub-0025426_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/J3/MD5E-s58161--8d32f36904a6f3ea227e833341b11bcf.mat/MD5E-s58161--8d32f36904a6f3ea227e833341b11bcf.mat

LMU_3/sub-0025426/ses-2/label/catROI_sub-0025426_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/2Q/MD5E-s189088--9a0d25836503c750f4b752150c37716f.xml/MD5E-s189088--9a0d25836503c750f4b752150c37716f.xml

LMU_3/sub-0025426/ses-2/label/catROIs_sub-0025426_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/ZQ/MD5E-s120076--595bbfaa3162f973849b9e71499d7d65.mat/MD5E-s120076--595bbfaa3162f973849b9e71499d7d65.mat

LMU_3/sub-0025426/ses-2/label/catROIs_sub-0025426_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/4v/MD5E-s332119--4d2ecfd08fd5e36a9c42823ef57db722.xml/MD5E-s332119--4d2ecfd08fd5e36a9c42823ef57db722.xml

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/KP/MD5E-s176123--86f7ee6f2af993a78b84bdb5855a0724.nii.gz/MD5E-s176123--86f7ee6f2af993a78b84bdb5855a0724.nii.gz

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/0G/MD5E-s196443--5268d356feb668668cfafe2a95b7d9b9.nii.gz/MD5E-s196443--5268d356feb668668cfafe2a95b7d9b9.nii.gz

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/Q1/MD5E-s264943--4d3f8bdb943f8c4d77af50c5f79cf75a.nii.gz/MD5E-s264943--4d3f8bdb943f8c4d77af50c5f79cf75a.nii.gz

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025426/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/4X/MD5E-s293569--bcaa8e7747caa50fd9333ed3fdff89dd.nii.gz/MD5E-s293569--bcaa8e7747caa50fd9333ed3fdff89dd.nii.gz

LMU_3/sub-0025426/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025426/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/Jz/MD5E-s23283--cb29ad598b3b4a50bea8989a78f2ea5b.nii.gz/MD5E-s23283--cb29ad598b3b4a50bea8989a78f2ea5b.nii.gz

LMU_3/sub-0025426/ses-2/mri/aal3_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025426/ses-2/mri/aal3_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/qm/MD5E-s195801--7a8600be7bff7e559b18895872878b3d.nii.gz/MD5E-s195801--7a8600be7bff7e559b18895872878b3d.nii.gz

LMU_3/sub-0025426/ses-2/mri/anatomy3_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025426/ses-2/mri/anatomy3_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/Gm/MD5E-s143119--71b263cd572d597851f7852c4940debc.nii.gz/MD5E-s143119--71b263cd572d597851f7852c4940debc.nii.gz

LMU_3/sub-0025426/ses-2/mri/anon_misub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/Km/MD5E-s8949225--64a44e70ca40cc626cc2741bc39d0884.nii.gz/MD5E-s8949225--64a44e70ca40cc626cc2741bc39d0884.nii.gz

LMU_3/sub-0025426/ses-2/mri/anon_msub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/48/MD5E-s9435280--617ed6d4572bf70699457792a06cfb21.nii.gz/MD5E-s9435280--617ed6d4572bf70699457792a06cfb21.nii.gz

LMU_3/sub-0025426/ses-2/mri/cat_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/8v/MD5E-s114446--5ef065a465965b5fc2613701c6de49ad.nii.gz/MD5E-s114446--5ef065a465965b5fc2613701c6de49ad.nii.gz

LMU_3/sub-0025426/ses-2/mri/cobra_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025426/ses-2/mri/cobra_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/qz/MD5E-s46590--2080c0d66617ba5c9da287f6dc908996.nii.gz/MD5E-s46590--2080c0d66617ba5c9da287f6dc908996.nii.gz

LMU_3/sub-0025426/ses-2/mri/hammers_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025426/ses-2/mri/hammers_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/WM/MD5E-s157972--d7028a1b635e53a9d7c77886f79852a9.nii.gz/MD5E-s157972--d7028a1b635e53a9d7c77886f79852a9.nii.gz

LMU_3/sub-0025426/ses-2/mri/ibsr_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025426/ses-2/mri/ibsr_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/kx/MD5E-s164243--873ee2dd30683669d4deb68dd53b2ae3.nii.gz/MD5E-s164243--873ee2dd30683669d4deb68dd53b2ae3.nii.gz

LMU_3/sub-0025426/ses-2/mri/it_sub-0025426_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/41/MD5E-s284--d8008549bdfdda65d90b35cfb9b7c991.mat/MD5E-s284--d8008549bdfdda65d90b35cfb9b7c991.mat

LMU_3/sub-0025426/ses-2/mri/it_sub-0025426_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/M4/MD5E-s284--7cc6184939cca912c064067b38cd6558.mat/MD5E-s284--7cc6184939cca912c064067b38cd6558.mat

LMU_3/sub-0025426/ses-2/mri/iy_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/pw/MD5E-s50080676--8225f1e68b7aed48a8cbcd17ce27c87e.nii.gz/MD5E-s50080676--8225f1e68b7aed48a8cbcd17ce27c87e.nii.gz

LMU_3/sub-0025426/ses-2/mri/julichbrain_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025426/ses-2/mri/julichbrain_sub-0025426_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/7G/FX/MD5E-s212209--66302d2e20a17b5f16b03433ffdaa08f.nii.gz/MD5E-s212209--66302d2e20a17b5f16b03433ffdaa08f.nii.gz

LMU_3/sub-0025426/ses-2/mri/lpba40_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025426/ses-2/mri/lpba40_sub-0025426_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/j0/v5/MD5E-s152021--1cb9064604d5e3a9f89930eb927ccf87.nii.gz/MD5E-s152021--1cb9064604d5e3a9f89930eb927ccf87.nii.gz

LMU_3/sub-0025426/ses-2/mri/m0wp1sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/Kx/MD5E-s2594424--fe046ffb6375696464407eec83c91ef9.nii.gz/MD5E-s2594424--fe046ffb6375696464407eec83c91ef9.nii.gz

LMU_3/sub-0025426/ses-2/mri/m0wp2sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/2x/MD5E-s2325078--367f4568da605b4fe9d837072b5421e6.nii.gz/MD5E-s2325078--367f4568da605b4fe9d837072b5421e6.nii.gz

LMU_3/sub-0025426/ses-2/mri/m0wp3sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/5J/MD5E-s2660115--b23f3bcd1976fcb5ae1c498ca115f1e6.nii.gz/MD5E-s2660115--b23f3bcd1976fcb5ae1c498ca115f1e6.nii.gz

LMU_3/sub-0025426/ses-2/mri/mori_sub-0025426_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025426/ses-2/mri/mori_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/V4/MD5E-s183631--16bd821902aa59c5e74f33b0baee24dd.nii.gz/MD5E-s183631--16bd821902aa59c5e74f33b0baee24dd.nii.gz

LMU_3/sub-0025426/ses-2/mri/mwp1sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/mwp2sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-2/mri/mwp3sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/neuromorphometrics_sub-0025426_ses-2_run-1_T1w.csv

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LMU_3/sub-0025426/ses-2/mri/neuromorphometrics_sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/p0sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/jm/MD5E-s707240--99c04af09462cc84422c8c897b9be0b0.nii.gz/MD5E-s707240--99c04af09462cc84422c8c897b9be0b0.nii.gz

LMU_3/sub-0025426/ses-2/mri/p1sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/p2sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/p3sub-0025426_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025426/ses-2/mri/rp1sub-0025426_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-2/mri/rp2sub-0025426_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-2/mri/rp3sub-0025426_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025426/ses-2/mri/t_sub-0025426_ses-2_run-1_T1w_affine_reorient.mat

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LMU_3/sub-0025426/ses-2/mri/t_sub-0025426_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025426/ses-2/mri/thalamus_sub-0025426_ses-2_run-1_T1w.csv

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LMU_3/sub-0025426/ses-2/mri/thalamus_sub-0025426_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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