[DATALAD RUNCMD] Compute BNU_2/sub-0025972/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025972/ses-1/anat/sub-0025972_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025972/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025972/ses-1/label/catROI_sub-0025972_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/k6/MD5E-s57713--1b5dcc646e369001aae41ba332a9c55a.mat/MD5E-s57713--1b5dcc646e369001aae41ba332a9c55a.mat

BNU_2/sub-0025972/ses-1/label/catROI_sub-0025972_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/wk/MD5E-s189099--1e824d48a0b31dc5851b26aa72dd4d6e.xml/MD5E-s189099--1e824d48a0b31dc5851b26aa72dd4d6e.xml

BNU_2/sub-0025972/ses-1/label/catROIs_sub-0025972_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/3F/MD5E-s120048--0be39e5ebbc0fb10daa5a776e34e5b8e.mat/MD5E-s120048--0be39e5ebbc0fb10daa5a776e34e5b8e.mat

BNU_2/sub-0025972/ses-1/label/catROIs_sub-0025972_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/7M/MD5E-s332168--b0c66a38f3a31cef97f74bdc6dc14888.xml/MD5E-s332168--b0c66a38f3a31cef97f74bdc6dc14888.xml

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/wk/MD5E-s137082--f871ef70cb938830f23430b15e145eff.nii.gz/MD5E-s137082--f871ef70cb938830f23430b15e145eff.nii.gz

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/11/MD5E-s153816--45b14703a619d1414631efab34edf631.nii.gz/MD5E-s153816--45b14703a619d1414631efab34edf631.nii.gz

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/Z5/MD5E-s203544--921ca567f199b6fd3bfdc3fab16ac4b4.nii.gz/MD5E-s203544--921ca567f199b6fd3bfdc3fab16ac4b4.nii.gz

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025972/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fM/K4/MD5E-s226375--6e17bf4fd3d9cedee3431625ec05d941.nii.gz/MD5E-s226375--6e17bf4fd3d9cedee3431625ec05d941.nii.gz

BNU_2/sub-0025972/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025972/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/FZ/MD5E-s19337--35887a33729daf72a8fce4b6f9400211.nii.gz/MD5E-s19337--35887a33729daf72a8fce4b6f9400211.nii.gz

BNU_2/sub-0025972/ses-1/mri/aal3_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025972/ses-1/mri/aal3_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/19/MD5E-s155908--caf283d989cd378f68fbfb906c91e076.nii.gz/MD5E-s155908--caf283d989cd378f68fbfb906c91e076.nii.gz

BNU_2/sub-0025972/ses-1/mri/anatomy3_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025972/ses-1/mri/anatomy3_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/Xg/MD5E-s108765--3b4d431ad77006b232d3eb8266893b40.nii.gz/MD5E-s108765--3b4d431ad77006b232d3eb8266893b40.nii.gz

BNU_2/sub-0025972/ses-1/mri/anon_misub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/WM/MD5E-s3586092--84347d676357dc9003ddf0e350cef94d.nii.gz/MD5E-s3586092--84347d676357dc9003ddf0e350cef94d.nii.gz

BNU_2/sub-0025972/ses-1/mri/anon_msub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/7k/MD5E-s6895778--9dbb53752f98473dcf2c89ae1d2ce125.nii.gz/MD5E-s6895778--9dbb53752f98473dcf2c89ae1d2ce125.nii.gz

BNU_2/sub-0025972/ses-1/mri/cat_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/zQ/MD5E-s80298--02ee4385030c1084f28e0ed6d494f21a.nii.gz/MD5E-s80298--02ee4385030c1084f28e0ed6d494f21a.nii.gz

BNU_2/sub-0025972/ses-1/mri/cobra_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025972/ses-1/mri/cobra_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/VJ/MD5E-s39439--a5e411c807d698b411621799456e6519.nii.gz/MD5E-s39439--a5e411c807d698b411621799456e6519.nii.gz

BNU_2/sub-0025972/ses-1/mri/hammers_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025972/ses-1/mri/hammers_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G2/wp/MD5E-s121458--2f53eb50d311cb6b619ea59941c00ac2.nii.gz/MD5E-s121458--2f53eb50d311cb6b619ea59941c00ac2.nii.gz

BNU_2/sub-0025972/ses-1/mri/ibsr_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025972/ses-1/mri/ibsr_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/87/MD5E-s127211--a47a11f4607095e32abcc84d7c970c5e.nii.gz/MD5E-s127211--a47a11f4607095e32abcc84d7c970c5e.nii.gz

BNU_2/sub-0025972/ses-1/mri/it_sub-0025972_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/KW/MD5E-s283--8087e012ab6d510bd53062ad4e8c3a47.mat/MD5E-s283--8087e012ab6d510bd53062ad4e8c3a47.mat

BNU_2/sub-0025972/ses-1/mri/it_sub-0025972_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/W7/MD5E-s283--00f879ed48bd52c4c720eb28ef5c4c5a.mat/MD5E-s283--00f879ed48bd52c4c720eb28ef5c4c5a.mat

BNU_2/sub-0025972/ses-1/mri/iy_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/3q/MD5E-s31997652--17e94100980370997b7a358539723a26.nii.gz/MD5E-s31997652--17e94100980370997b7a358539723a26.nii.gz

BNU_2/sub-0025972/ses-1/mri/julichbrain_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025972/ses-1/mri/julichbrain_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/Z0/MD5E-s162393--f30f89ecbbcd76db3bdd6876bda2a629.nii.gz/MD5E-s162393--f30f89ecbbcd76db3bdd6876bda2a629.nii.gz

BNU_2/sub-0025972/ses-1/mri/lpba40_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025972/ses-1/mri/lpba40_sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/m0wp1sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/Kp/MD5E-s2589269--bf0d4f5bdb9a9086cd573ad0348dbfb5.nii.gz/MD5E-s2589269--bf0d4f5bdb9a9086cd573ad0348dbfb5.nii.gz

BNU_2/sub-0025972/ses-1/mri/m0wp2sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/jx/MD5E-s2265241--6ee5ad4248b239c107e61598d672df6f.nii.gz/MD5E-s2265241--6ee5ad4248b239c107e61598d672df6f.nii.gz

BNU_2/sub-0025972/ses-1/mri/m0wp3sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/4j/MD5E-s2428587--a71d9cd3295cbed7c1897940da330478.nii.gz/MD5E-s2428587--a71d9cd3295cbed7c1897940da330478.nii.gz

BNU_2/sub-0025972/ses-1/mri/mori_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025972/ses-1/mri/mori_sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/8K/MD5E-s142038--f4d8f1d4df3343f4101a0e4e7eae6cb4.nii.gz/MD5E-s142038--f4d8f1d4df3343f4101a0e4e7eae6cb4.nii.gz

BNU_2/sub-0025972/ses-1/mri/mwp1sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/mwp2sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/mwp3sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/neuromorphometrics_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/neuromorphometrics_sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/p0sub-0025972_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/p1sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/p2sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/p3sub-0025972_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025972/ses-1/mri/rp1sub-0025972_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025972/ses-1/mri/rp2sub-0025972_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025972/ses-1/mri/rp3sub-0025972_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025972/ses-1/mri/t_sub-0025972_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/t_sub-0025972_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/thalamus_sub-0025972_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025972/ses-1/mri/thalamus_sub-0025972_ses-1_run-1_T1w.nii.gz

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