[DATALAD RUNCMD] Compute BNU_2/sub-0025968/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025968/ses-1/anat/sub-0025968_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025968/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025968/ses-1/label/catROI_sub-0025968_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/GQ/MD5E-s61381--878e8411da56d77287afe122523bdbc9.mat/MD5E-s61381--878e8411da56d77287afe122523bdbc9.mat

BNU_2/sub-0025968/ses-1/label/catROI_sub-0025968_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/4p/MD5E-s188764--eb42e03b8a1a21c051b3126ec0ae1664.xml/MD5E-s188764--eb42e03b8a1a21c051b3126ec0ae1664.xml

BNU_2/sub-0025968/ses-1/label/catROIs_sub-0025968_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/Km/MD5E-s120050--1ca31f9555abb6a71a67049b6553f545.mat/MD5E-s120050--1ca31f9555abb6a71a67049b6553f545.mat

BNU_2/sub-0025968/ses-1/label/catROIs_sub-0025968_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/ZV/MD5E-s332121--397fee9975ff5317e73a5b6de3c1b206.xml/MD5E-s332121--397fee9975ff5317e73a5b6de3c1b206.xml

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/0Z/MD5E-s161780--12da73e74a2510b2ae13c206cd0980df.nii.gz/MD5E-s161780--12da73e74a2510b2ae13c206cd0980df.nii.gz

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/Kg/MD5E-s182351--1947130c00d6f66ced67391eea479858.nii.gz/MD5E-s182351--1947130c00d6f66ced67391eea479858.nii.gz

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/kw/MD5E-s241497--0dba60e6b5f7888dfb831f53a7b3d402.nii.gz/MD5E-s241497--0dba60e6b5f7888dfb831f53a7b3d402.nii.gz

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025968/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/vX/MD5E-s268952--caa9a55bd73ef83bae9dbd131a35510c.nii.gz/MD5E-s268952--caa9a55bd73ef83bae9dbd131a35510c.nii.gz

BNU_2/sub-0025968/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025968/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/52/MD5E-s20978--07ce2133e3accde4f4f201a5fcc4bf91.nii.gz/MD5E-s20978--07ce2133e3accde4f4f201a5fcc4bf91.nii.gz

BNU_2/sub-0025968/ses-1/mri/aal3_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025968/ses-1/mri/aal3_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/2q/MD5E-s182932--8fb0c849834736872f90f41829181cf6.nii.gz/MD5E-s182932--8fb0c849834736872f90f41829181cf6.nii.gz

BNU_2/sub-0025968/ses-1/mri/anatomy3_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025968/ses-1/mri/anatomy3_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/2w/MD5E-s127915--6cd4d1b2a0cd98ab00f0ec39cadd6bd2.nii.gz/MD5E-s127915--6cd4d1b2a0cd98ab00f0ec39cadd6bd2.nii.gz

BNU_2/sub-0025968/ses-1/mri/anon_misub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/Gj/MD5E-s4816522--4fad5654a93a79e120df7fb941de938d.nii.gz/MD5E-s4816522--4fad5654a93a79e120df7fb941de938d.nii.gz

BNU_2/sub-0025968/ses-1/mri/anon_msub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/F6/MD5E-s9747825--ffbfe7eefa8f7e5b64fc5e275ecfac3c.nii.gz/MD5E-s9747825--ffbfe7eefa8f7e5b64fc5e275ecfac3c.nii.gz

BNU_2/sub-0025968/ses-1/mri/cat_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/P4/MD5E-s100321--738b6fa40c09dbe089d3178f63391bd9.nii.gz/MD5E-s100321--738b6fa40c09dbe089d3178f63391bd9.nii.gz

BNU_2/sub-0025968/ses-1/mri/cobra_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025968/ses-1/mri/cobra_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/kJ/MD5E-s43837--7a9f6330e498ec9f3928c0b0524002e0.nii.gz/MD5E-s43837--7a9f6330e498ec9f3928c0b0524002e0.nii.gz

BNU_2/sub-0025968/ses-1/mri/hammers_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025968/ses-1/mri/hammers_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/5Z/MD5E-s144770--34a675297df95b969b2ad3050623ab80.nii.gz/MD5E-s144770--34a675297df95b969b2ad3050623ab80.nii.gz

BNU_2/sub-0025968/ses-1/mri/ibsr_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025968/ses-1/mri/ibsr_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/z6/MD5E-s151447--bb8fea0e906f0563eb805c030eea6216.nii.gz/MD5E-s151447--bb8fea0e906f0563eb805c030eea6216.nii.gz

BNU_2/sub-0025968/ses-1/mri/it_sub-0025968_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/kv/MD5E-s284--40d55a7ea4461acdbbea6c67d4bc4f31.mat/MD5E-s284--40d55a7ea4461acdbbea6c67d4bc4f31.mat

BNU_2/sub-0025968/ses-1/mri/it_sub-0025968_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/zq/MD5E-s284--d44881eb9e9b1ca5f884934205e9e67c.mat/MD5E-s284--d44881eb9e9b1ca5f884934205e9e67c.mat

BNU_2/sub-0025968/ses-1/mri/iy_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/ZM/MD5E-s39639410--11ec847699f70842ce7e26688c2e6021.nii.gz/MD5E-s39639410--11ec847699f70842ce7e26688c2e6021.nii.gz

BNU_2/sub-0025968/ses-1/mri/julichbrain_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025968/ses-1/mri/julichbrain_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VW/9V/MD5E-s194307--1a18c43bb119babb48af8c31528026a3.nii.gz/MD5E-s194307--1a18c43bb119babb48af8c31528026a3.nii.gz

BNU_2/sub-0025968/ses-1/mri/lpba40_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025968/ses-1/mri/lpba40_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/kF/MD5E-s141127--527a2daa1bc5d1a4908eaacf33b460d4.nii.gz/MD5E-s141127--527a2daa1bc5d1a4908eaacf33b460d4.nii.gz

BNU_2/sub-0025968/ses-1/mri/m0wp1sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/vv/MD5E-s2581301--fda0a9fa79675de8666fe0e4b4fcfeb9.nii.gz/MD5E-s2581301--fda0a9fa79675de8666fe0e4b4fcfeb9.nii.gz

BNU_2/sub-0025968/ses-1/mri/m0wp2sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/21/MD5E-s2297758--24529b4cfbde2d1b687a52226c515854.nii.gz/MD5E-s2297758--24529b4cfbde2d1b687a52226c515854.nii.gz

BNU_2/sub-0025968/ses-1/mri/m0wp3sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/M3/MD5E-s2509722--00584807ac8662df7aada13b2850ed08.nii.gz/MD5E-s2509722--00584807ac8662df7aada13b2850ed08.nii.gz

BNU_2/sub-0025968/ses-1/mri/mori_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025968/ses-1/mri/mori_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/Jx/MD5E-s167276--38166cd7f07e52abbe0a148414f51d54.nii.gz/MD5E-s167276--38166cd7f07e52abbe0a148414f51d54.nii.gz

BNU_2/sub-0025968/ses-1/mri/mwp1sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/WF/MD5E-s2580328--935a0aabedaa8a41ba9502cde66956fe.nii.gz/MD5E-s2580328--935a0aabedaa8a41ba9502cde66956fe.nii.gz

BNU_2/sub-0025968/ses-1/mri/mwp2sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/6f/MD5E-s2295552--b4236ef87393acfbd9770815014bfe39.nii.gz/MD5E-s2295552--b4236ef87393acfbd9770815014bfe39.nii.gz

BNU_2/sub-0025968/ses-1/mri/mwp3sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025968/ses-1/mri/neuromorphometrics_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025968/ses-1/mri/neuromorphometrics_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025968/ses-1/mri/p0sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/kZ/MD5E-s869927--4883070da2ba7dff3724165ab543b3e7.nii.gz/MD5E-s869927--4883070da2ba7dff3724165ab543b3e7.nii.gz

BNU_2/sub-0025968/ses-1/mri/p1sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/8J/MD5E-s885019--29ec15c4d3fd5af4b650caf400a81a07.nii.gz/MD5E-s885019--29ec15c4d3fd5af4b650caf400a81a07.nii.gz

BNU_2/sub-0025968/ses-1/mri/p2sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/Xk/MD5E-s583244--376b722a7c31dce0503be370185c6190.nii.gz/MD5E-s583244--376b722a7c31dce0503be370185c6190.nii.gz

BNU_2/sub-0025968/ses-1/mri/p3sub-0025968_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025968/ses-1/mri/rp1sub-0025968_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025968/ses-1/mri/rp2sub-0025968_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025968/ses-1/mri/rp3sub-0025968_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025968/ses-1/mri/t_sub-0025968_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025968/ses-1/mri/t_sub-0025968_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/6f/MD5E-s285--a4ffaaa0089bcf860037427c05026e29.mat/MD5E-s285--a4ffaaa0089bcf860037427c05026e29.mat

BNU_2/sub-0025968/ses-1/mri/thalamus_sub-0025968_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025968/ses-1/mri/thalamus_sub-0025968_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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