[DATALAD RUNCMD] Compute IACAS/sub-0025477/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025477/ses-2/anat/sub-0025477_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025477/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025477/ses-2/label/catROI_sub-0025477_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/Zp/MD5E-s57763--b75b792b5dbee14ca5dca327549fe44c.mat/MD5E-s57763--b75b792b5dbee14ca5dca327549fe44c.mat

IACAS/sub-0025477/ses-2/label/catROI_sub-0025477_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/WP/MD5E-s188959--85bcc95e96d114598fde77eceb753f1f.xml/MD5E-s188959--85bcc95e96d114598fde77eceb753f1f.xml

IACAS/sub-0025477/ses-2/label/catROIs_sub-0025477_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/W8/MD5E-s120263--e275120cb8fd1868407a2989ed6e5aa9.mat/MD5E-s120263--e275120cb8fd1868407a2989ed6e5aa9.mat

IACAS/sub-0025477/ses-2/label/catROIs_sub-0025477_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/wF/MD5E-s332097--d388e23e9df2e6baedef33e0d45bb4f4.xml/MD5E-s332097--d388e23e9df2e6baedef33e0d45bb4f4.xml

IACAS/sub-0025477/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025477/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/G7/MD5E-s151820--551de06471bd306395a516c6bea13cd1.nii.gz/MD5E-s151820--551de06471bd306395a516c6bea13cd1.nii.gz

IACAS/sub-0025477/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025477/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/KQ/MD5E-s170002--f0bc6904fb9000d8daacdb62ec85fe6e.nii.gz/MD5E-s170002--f0bc6904fb9000d8daacdb62ec85fe6e.nii.gz

IACAS/sub-0025477/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025477/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/M0/MD5E-s228074--e18d665d52223cf6eb84b2c18dc967c6.nii.gz/MD5E-s228074--e18d665d52223cf6eb84b2c18dc967c6.nii.gz

IACAS/sub-0025477/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025477/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/wZ/MD5E-s254307--3a80759e204a4c1207aaac02d8331cc1.nii.gz/MD5E-s254307--3a80759e204a4c1207aaac02d8331cc1.nii.gz

IACAS/sub-0025477/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025477/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/21/MD5E-s25102--5cae6ba03eedb467ed6957819b0b3458.nii.gz/MD5E-s25102--5cae6ba03eedb467ed6957819b0b3458.nii.gz

IACAS/sub-0025477/ses-2/mri/aal3_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025477/ses-2/mri/aal3_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/v0/MD5E-s173862--bf385ca81f8e9d9fc69bd97e76396fd7.nii.gz/MD5E-s173862--bf385ca81f8e9d9fc69bd97e76396fd7.nii.gz

IACAS/sub-0025477/ses-2/mri/anatomy3_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025477/ses-2/mri/anatomy3_sub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mj/qX/MD5E-s124462--ad6dd05e0caa758e23b9f9f2ecb2f410.nii.gz/MD5E-s124462--ad6dd05e0caa758e23b9f9f2ecb2f410.nii.gz

IACAS/sub-0025477/ses-2/mri/anon_misub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/Xm/MD5E-s9138594--3d6f084c14731405eefdf0fe18f8b830.nii.gz/MD5E-s9138594--3d6f084c14731405eefdf0fe18f8b830.nii.gz

IACAS/sub-0025477/ses-2/mri/anon_msub-0025477_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/PQ/MD5E-s10518251--bcd18f6569f5d472389420ae5012000b.nii.gz/MD5E-s10518251--bcd18f6569f5d472389420ae5012000b.nii.gz

IACAS/sub-0025477/ses-2/mri/cat_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/cobra_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025477/ses-2/mri/cobra_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/hammers_sub-0025477_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025477/ses-2/mri/hammers_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/ibsr_sub-0025477_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025477/ses-2/mri/ibsr_sub-0025477_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/zG/z5/MD5E-s145280--55820e16435bfac3ff53054e258a35ce.nii.gz/MD5E-s145280--55820e16435bfac3ff53054e258a35ce.nii.gz

IACAS/sub-0025477/ses-2/mri/it_sub-0025477_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/W2/MD5E-s282--0aa27a295c4833e6222d1a1ed6982ca8.mat/MD5E-s282--0aa27a295c4833e6222d1a1ed6982ca8.mat

IACAS/sub-0025477/ses-2/mri/it_sub-0025477_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/Fk/MD5E-s284--fcb90d2b491168a75983b21af03b3599.mat/MD5E-s284--fcb90d2b491168a75983b21af03b3599.mat

IACAS/sub-0025477/ses-2/mri/iy_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/julichbrain_sub-0025477_ses-2_run-1_T1w.csv

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IACAS/sub-0025477/ses-2/mri/julichbrain_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/lpba40_sub-0025477_ses-2_run-1_T1w.csv

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IACAS/sub-0025477/ses-2/mri/lpba40_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/m0wp1sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/m0wp2sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/m0wp3sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/mori_sub-0025477_ses-2_run-1_T1w.csv

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IACAS/sub-0025477/ses-2/mri/mori_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/mwp1sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/mwp2sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/mwp3sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/neuromorphometrics_sub-0025477_ses-2_run-1_T1w.csv

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IACAS/sub-0025477/ses-2/mri/neuromorphometrics_sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/p0sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/p1sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/p2sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/p3sub-0025477_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025477/ses-2/mri/rp1sub-0025477_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025477/ses-2/mri/rp2sub-0025477_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025477/ses-2/mri/rp3sub-0025477_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025477/ses-2/mri/t_sub-0025477_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025477/ses-2/mri/t_sub-0025477_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025477/ses-2/mri/thalamus_sub-0025477_ses-2_run-1_T1w.csv

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IACAS/sub-0025477/ses-2/mri/thalamus_sub-0025477_ses-2_run-1_T1w.nii.gz

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