[DATALAD RUNCMD] Compute BNU_2/sub-0025957/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025957/ses-1/anat/sub-0025957_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025957/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025957/ses-1/label/catROI_sub-0025957_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/fG/MD5E-s58005--96099c36602a3f3e6764912e4fe453dc.mat/MD5E-s58005--96099c36602a3f3e6764912e4fe453dc.mat

BNU_2/sub-0025957/ses-1/label/catROI_sub-0025957_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/q0/MD5E-s188598--979283c798a6b6fe7e030128b58bd60d.xml/MD5E-s188598--979283c798a6b6fe7e030128b58bd60d.xml

BNU_2/sub-0025957/ses-1/label/catROIs_sub-0025957_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/ZX/MD5E-s120110--41b4293492c3aaf5c2eb8b98aee3bf3d.mat/MD5E-s120110--41b4293492c3aaf5c2eb8b98aee3bf3d.mat

BNU_2/sub-0025957/ses-1/label/catROIs_sub-0025957_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/zP/MD5E-s332068--932de27da7ed5e4445f5919a8c1525af.xml/MD5E-s332068--932de27da7ed5e4445f5919a8c1525af.xml

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/4p/MD5E-s150242--50cc7b72b5c52118f0afe41ca51b69ce.nii.gz/MD5E-s150242--50cc7b72b5c52118f0afe41ca51b69ce.nii.gz

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/xF/MD5E-s166217--20bac6227ab993fabb197f7c31a45e4d.nii.gz/MD5E-s166217--20bac6227ab993fabb197f7c31a45e4d.nii.gz

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/Vx/MD5E-s223322--b1d15446b84a63e4cdaa2c9588822665.nii.gz/MD5E-s223322--b1d15446b84a63e4cdaa2c9588822665.nii.gz

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025957/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/WW/MD5E-s246529--54d11750e78fa07d1a5b92bd2e2a9d01.nii.gz/MD5E-s246529--54d11750e78fa07d1a5b92bd2e2a9d01.nii.gz

BNU_2/sub-0025957/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025957/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/P8/MD5E-s19515--1c4adf1f3ff9694069cfc558bd2a4e15.nii.gz/MD5E-s19515--1c4adf1f3ff9694069cfc558bd2a4e15.nii.gz

BNU_2/sub-0025957/ses-1/mri/aal3_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025957/ses-1/mri/aal3_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mf/Wx/MD5E-s165988--127f7897afad09398b724d9abf56bba2.nii.gz/MD5E-s165988--127f7897afad09398b724d9abf56bba2.nii.gz

BNU_2/sub-0025957/ses-1/mri/anatomy3_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025957/ses-1/mri/anatomy3_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/62/MD5E-s120298--220401ddb2924f3e85a78726fe7a12e0.nii.gz/MD5E-s120298--220401ddb2924f3e85a78726fe7a12e0.nii.gz

BNU_2/sub-0025957/ses-1/mri/anon_misub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/16/MD5E-s4156358--c22d534f3aa0d87c9ef758d96515a110.nii.gz/MD5E-s4156358--c22d534f3aa0d87c9ef758d96515a110.nii.gz

BNU_2/sub-0025957/ses-1/mri/anon_msub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/55/MD5E-s7051113--a46bc978bdb3fd5e0007e90d9e31219b.nii.gz/MD5E-s7051113--a46bc978bdb3fd5e0007e90d9e31219b.nii.gz

BNU_2/sub-0025957/ses-1/mri/cat_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/zP/MD5E-s90388--43b190b776ab99e74243ba9f06cc519f.nii.gz/MD5E-s90388--43b190b776ab99e74243ba9f06cc519f.nii.gz

BNU_2/sub-0025957/ses-1/mri/cobra_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025957/ses-1/mri/cobra_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/KJ/MD5E-s40351--8d488d1ad03f0f56599eff2651d6a274.nii.gz/MD5E-s40351--8d488d1ad03f0f56599eff2651d6a274.nii.gz

BNU_2/sub-0025957/ses-1/mri/hammers_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025957/ses-1/mri/hammers_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/Jm/MD5E-s132086--8116d2b95dbc6cccaf26ec2abb75cbc2.nii.gz/MD5E-s132086--8116d2b95dbc6cccaf26ec2abb75cbc2.nii.gz

BNU_2/sub-0025957/ses-1/mri/ibsr_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025957/ses-1/mri/ibsr_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/Kj/MD5E-s138514--f1f950c8354b69c73a0ca930138756d9.nii.gz/MD5E-s138514--f1f950c8354b69c73a0ca930138756d9.nii.gz

BNU_2/sub-0025957/ses-1/mri/it_sub-0025957_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/02/MD5E-s284--6aa88926d808fda13709116f52e2b174.mat/MD5E-s284--6aa88926d808fda13709116f52e2b174.mat

BNU_2/sub-0025957/ses-1/mri/it_sub-0025957_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/f8/MD5E-s284--4234281908fbcb3a64f1ef7c8c0a699a.mat/MD5E-s284--4234281908fbcb3a64f1ef7c8c0a699a.mat

BNU_2/sub-0025957/ses-1/mri/iy_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/9K/MD5E-s36002029--93b30626a66bf3509927327455cbbc7d.nii.gz/MD5E-s36002029--93b30626a66bf3509927327455cbbc7d.nii.gz

BNU_2/sub-0025957/ses-1/mri/julichbrain_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025957/ses-1/mri/julichbrain_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/k3/MD5E-s178860--7dd7c204c3a68801004612f8524b60f5.nii.gz/MD5E-s178860--7dd7c204c3a68801004612f8524b60f5.nii.gz

BNU_2/sub-0025957/ses-1/mri/lpba40_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025957/ses-1/mri/lpba40_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/J4/MD5E-s129506--459639dfc8a4cfa45d9745b1a4101bb9.nii.gz/MD5E-s129506--459639dfc8a4cfa45d9745b1a4101bb9.nii.gz

BNU_2/sub-0025957/ses-1/mri/m0wp1sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/m9/MD5E-s2588616--40826d53ccd84e187fa149cd90b9db08.nii.gz/MD5E-s2588616--40826d53ccd84e187fa149cd90b9db08.nii.gz

BNU_2/sub-0025957/ses-1/mri/m0wp2sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/6g/MD5E-s2278259--eb0a3120b807b9f29c34b9fc437e108c.nii.gz/MD5E-s2278259--eb0a3120b807b9f29c34b9fc437e108c.nii.gz

BNU_2/sub-0025957/ses-1/mri/m0wp3sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/g2/MD5E-s2476480--f7636eddfdd476fcb2cfb88cbb6c969c.nii.gz/MD5E-s2476480--f7636eddfdd476fcb2cfb88cbb6c969c.nii.gz

BNU_2/sub-0025957/ses-1/mri/mori_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025957/ses-1/mri/mori_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qp/JF/MD5E-s154237--e83474e1c3066cbf7e0e06fc652cd596.nii.gz/MD5E-s154237--e83474e1c3066cbf7e0e06fc652cd596.nii.gz

BNU_2/sub-0025957/ses-1/mri/mwp1sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/pK/MD5E-s2589314--93a0fe9cfea371c20880e29b7f24392a.nii.gz/MD5E-s2589314--93a0fe9cfea371c20880e29b7f24392a.nii.gz

BNU_2/sub-0025957/ses-1/mri/mwp2sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/M9/MD5E-s2272429--6a0ecab1b4a2b765bf790346cbec0c0b.nii.gz/MD5E-s2272429--6a0ecab1b4a2b765bf790346cbec0c0b.nii.gz

BNU_2/sub-0025957/ses-1/mri/mwp3sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/3W/MD5E-s2473371--9d7d8627d09aa35880c649f708966817.nii.gz/MD5E-s2473371--9d7d8627d09aa35880c649f708966817.nii.gz

BNU_2/sub-0025957/ses-1/mri/neuromorphometrics_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025957/ses-1/mri/neuromorphometrics_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/27/MD5E-s179169--42412bab8dfded799bb1d71024b14013.nii.gz/MD5E-s179169--42412bab8dfded799bb1d71024b14013.nii.gz

BNU_2/sub-0025957/ses-1/mri/p0sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/W2/MD5E-s768645--f3fe6556d69b82e41eb5441b651a1e0c.nii.gz/MD5E-s768645--f3fe6556d69b82e41eb5441b651a1e0c.nii.gz

BNU_2/sub-0025957/ses-1/mri/p1sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/Vp/MD5E-s787832--e47c4582ecfe1a0768dc086ff73df6c7.nii.gz/MD5E-s787832--e47c4582ecfe1a0768dc086ff73df6c7.nii.gz

BNU_2/sub-0025957/ses-1/mri/p2sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/Q6/MD5E-s529767--dc080cb50949ed59a7c850143214312a.nii.gz/MD5E-s529767--dc080cb50949ed59a7c850143214312a.nii.gz

BNU_2/sub-0025957/ses-1/mri/p3sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/p3/MD5E-s481474--587738a198e93c93610eaf50b26fb245.nii.gz/MD5E-s481474--587738a198e93c93610eaf50b26fb245.nii.gz

BNU_2/sub-0025957/ses-1/mri/rp1sub-0025957_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/PF/MD5E-s446363--718aaa6369a853f605eb563dffc52bbd.nii.gz/MD5E-s446363--718aaa6369a853f605eb563dffc52bbd.nii.gz

BNU_2/sub-0025957/ses-1/mri/rp2sub-0025957_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025957/ses-1/mri/rp3sub-0025957_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025957/ses-1/mri/t_sub-0025957_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/GJ/MD5E-s284--fe821495f7aac7c45fcd6fa76c89679c.mat/MD5E-s284--fe821495f7aac7c45fcd6fa76c89679c.mat

BNU_2/sub-0025957/ses-1/mri/t_sub-0025957_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/22/MD5E-s285--785c2dbd36a412b9f76902a5efa64423.mat/MD5E-s285--785c2dbd36a412b9f76902a5efa64423.mat

BNU_2/sub-0025957/ses-1/mri/thalamus_sub-0025957_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025957/ses-1/mri/thalamus_sub-0025957_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/2V/MD5E-s12476--0677ac8671b1d59e97916afc0bde67f0.nii.gz/MD5E-s12476--0677ac8671b1d59e97916afc0bde67f0.nii.gz

BNU_2/sub-0025957/ses-1/mri/wj_sub-0025957_ses-1_run-1_T1w.nii.gz

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