[DATALAD RUNCMD] Compute LMU_3/sub-0025403/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025403/ses-2/anat/sub-0025403_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025403/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025403/ses-2/label/catROI_sub-0025403_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/53/MD5E-s58092--6390e290dafe4d8768daa11b4f199ea2.mat/MD5E-s58092--6390e290dafe4d8768daa11b4f199ea2.mat

LMU_3/sub-0025403/ses-2/label/catROI_sub-0025403_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/zP/MD5E-s189375--42e014c0625881a8ef8c48781eae11ec.xml/MD5E-s189375--42e014c0625881a8ef8c48781eae11ec.xml

LMU_3/sub-0025403/ses-2/label/catROIs_sub-0025403_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/7W/MD5E-s120212--41915765ff83505658b068d52c6dc83c.mat/MD5E-s120212--41915765ff83505658b068d52c6dc83c.mat

LMU_3/sub-0025403/ses-2/label/catROIs_sub-0025403_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/X8/MD5E-s332166--c62022e2dd228675ede78cd8857bdc94.xml/MD5E-s332166--c62022e2dd228675ede78cd8857bdc94.xml

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/Jp/MD5E-s154622--9493481d812ddb691a5e3d9430ee16b7.nii.gz/MD5E-s154622--9493481d812ddb691a5e3d9430ee16b7.nii.gz

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/Wz/MD5E-s173025--832e77d7ba21803a3f04dc1b1c908375.nii.gz/MD5E-s173025--832e77d7ba21803a3f04dc1b1c908375.nii.gz

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/m8/MD5E-s235463--b6d116b77c337255e457418f64bd5a57.nii.gz/MD5E-s235463--b6d116b77c337255e457418f64bd5a57.nii.gz

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025403/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/Wk/MD5E-s261127--e51731cf2f6776f4b6620b6e3f6bef4a.nii.gz/MD5E-s261127--e51731cf2f6776f4b6620b6e3f6bef4a.nii.gz

LMU_3/sub-0025403/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025403/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/kF/MD5E-s21536--b2aa67f52f2018859c659f248b2c4f1a.nii.gz/MD5E-s21536--b2aa67f52f2018859c659f248b2c4f1a.nii.gz

LMU_3/sub-0025403/ses-2/mri/aal3_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025403/ses-2/mri/aal3_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/F1/MD5E-s179160--608c65bef332cc5211d156acf49872d8.nii.gz/MD5E-s179160--608c65bef332cc5211d156acf49872d8.nii.gz

LMU_3/sub-0025403/ses-2/mri/anatomy3_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025403/ses-2/mri/anatomy3_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/04/MD5E-s126284--ec9dffdaa98600c9f4bff72451ed152b.nii.gz/MD5E-s126284--ec9dffdaa98600c9f4bff72451ed152b.nii.gz

LMU_3/sub-0025403/ses-2/mri/anon_misub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/M6/MD5E-s10526690--f18acd35c0376d5fc9453a566a0297d0.nii.gz/MD5E-s10526690--f18acd35c0376d5fc9453a566a0297d0.nii.gz

LMU_3/sub-0025403/ses-2/mri/anon_msub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/93/MD5E-s10895837--0fa1753c1674dc69f29e077a3eb3d944.nii.gz/MD5E-s10895837--0fa1753c1674dc69f29e077a3eb3d944.nii.gz

LMU_3/sub-0025403/ses-2/mri/cat_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/k0/MD5E-s108542--dab64823a1b0f6be706197cb0587305a.nii.gz/MD5E-s108542--dab64823a1b0f6be706197cb0587305a.nii.gz

LMU_3/sub-0025403/ses-2/mri/cobra_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025403/ses-2/mri/cobra_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/gG/MD5E-s46144--7fa4de3da68b0d601fc7ebe3aa085077.nii.gz/MD5E-s46144--7fa4de3da68b0d601fc7ebe3aa085077.nii.gz

LMU_3/sub-0025403/ses-2/mri/hammers_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025403/ses-2/mri/hammers_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/3K/MD5E-s141221--a5c879797f526a0733e9b2b7567d5b89.nii.gz/MD5E-s141221--a5c879797f526a0733e9b2b7567d5b89.nii.gz

LMU_3/sub-0025403/ses-2/mri/ibsr_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025403/ses-2/mri/ibsr_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/07/MD5E-s148448--8b003411c22b757948ed31a1c8cf95a5.nii.gz/MD5E-s148448--8b003411c22b757948ed31a1c8cf95a5.nii.gz

LMU_3/sub-0025403/ses-2/mri/it_sub-0025403_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/j8/MD5E-s284--ab2e98a38cb6b8b60a84ff5162fdc4f8.mat/MD5E-s284--ab2e98a38cb6b8b60a84ff5162fdc4f8.mat

LMU_3/sub-0025403/ses-2/mri/it_sub-0025403_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0g/41/MD5E-s284--5414bcd201f075945c75639870e24b73.mat/MD5E-s284--5414bcd201f075945c75639870e24b73.mat

LMU_3/sub-0025403/ses-2/mri/iy_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/Gz/MD5E-s44358030--a0473559e774917431497cfa830d55e5.nii.gz/MD5E-s44358030--a0473559e774917431497cfa830d55e5.nii.gz

LMU_3/sub-0025403/ses-2/mri/julichbrain_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025403/ses-2/mri/julichbrain_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/W5/MD5E-s187010--507af7fbe930cf75e6b52709321e09ea.nii.gz/MD5E-s187010--507af7fbe930cf75e6b52709321e09ea.nii.gz

LMU_3/sub-0025403/ses-2/mri/lpba40_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025403/ses-2/mri/lpba40_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/4Q/MD5E-s137320--f6a1fba8231e15e121789853d6d92575.nii.gz/MD5E-s137320--f6a1fba8231e15e121789853d6d92575.nii.gz

LMU_3/sub-0025403/ses-2/mri/m0wp1sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/M3/MD5E-s2610945--aa5b94c22791203fb88715bbbc0836a5.nii.gz/MD5E-s2610945--aa5b94c22791203fb88715bbbc0836a5.nii.gz

LMU_3/sub-0025403/ses-2/mri/m0wp2sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/0Z/MD5E-s2339320--f3b97a5b55d5f9beebac742103969ed5.nii.gz/MD5E-s2339320--f3b97a5b55d5f9beebac742103969ed5.nii.gz

LMU_3/sub-0025403/ses-2/mri/m0wp3sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/M0/MD5E-s2777340--2b9797c92af29d52bc9794dcca4025ba.nii.gz/MD5E-s2777340--2b9797c92af29d52bc9794dcca4025ba.nii.gz

LMU_3/sub-0025403/ses-2/mri/mori_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025403/ses-2/mri/mori_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/q1/MD5E-s165462--4fac227b0ed44591af781aa024fd1853.nii.gz/MD5E-s165462--4fac227b0ed44591af781aa024fd1853.nii.gz

LMU_3/sub-0025403/ses-2/mri/mwp1sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/XG/MD5E-s2613852--d950837f242b1725c1d38ec434b5d4a5.nii.gz/MD5E-s2613852--d950837f242b1725c1d38ec434b5d4a5.nii.gz

LMU_3/sub-0025403/ses-2/mri/mwp2sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/1p/MD5E-s2343538--0b8b360eb370222304f714aecbcca5fd.nii.gz/MD5E-s2343538--0b8b360eb370222304f714aecbcca5fd.nii.gz

LMU_3/sub-0025403/ses-2/mri/mwp3sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/6g/MD5E-s2774446--14821f824c2a6be2bc2033b931cbe03d.nii.gz/MD5E-s2774446--14821f824c2a6be2bc2033b931cbe03d.nii.gz

LMU_3/sub-0025403/ses-2/mri/neuromorphometrics_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025403/ses-2/mri/neuromorphometrics_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/qP/MD5E-s189907--9f0350bf48e3ec8a26eeee3e6f6fc651.nii.gz/MD5E-s189907--9f0350bf48e3ec8a26eeee3e6f6fc651.nii.gz

LMU_3/sub-0025403/ses-2/mri/p0sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/5Q/MD5E-s646890--eca761fbe4ccbd8c658c0c089e095894.nii.gz/MD5E-s646890--eca761fbe4ccbd8c658c0c089e095894.nii.gz

LMU_3/sub-0025403/ses-2/mri/p1sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/vj/MD5E-s670474--550f984e6f5840327f4684333d670b53.nii.gz/MD5E-s670474--550f984e6f5840327f4684333d670b53.nii.gz

LMU_3/sub-0025403/ses-2/mri/p2sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025403/ses-2/mri/p3sub-0025403_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025403/ses-2/mri/rp1sub-0025403_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025403/ses-2/mri/rp2sub-0025403_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025403/ses-2/mri/rp3sub-0025403_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025403/ses-2/mri/t_sub-0025403_ses-2_run-1_T1w_affine_reorient.mat

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LMU_3/sub-0025403/ses-2/mri/t_sub-0025403_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/vM/MD5E-s284--9063e9047f2883dfe749b802b5afe81f.mat/MD5E-s284--9063e9047f2883dfe749b802b5afe81f.mat

LMU_3/sub-0025403/ses-2/mri/thalamus_sub-0025403_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025403/ses-2/mri/thalamus_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025403/ses-2/mri/wj_sub-0025403_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025403/ses-2/mri/wmisub-0025403_ses-2_run-1_T1w.nii.gz

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