[DATALAD RUNCMD] Compute JHNU/sub-0025602/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025602/ses-1/anat/sub-0025602_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025602/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025602/ses-1/label/catROI_sub-0025602_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/w1/MD5E-s58079--100ba2fa25a68a84dfa493560d448408.mat/MD5E-s58079--100ba2fa25a68a84dfa493560d448408.mat

JHNU/sub-0025602/ses-1/label/catROI_sub-0025602_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/FK/MD5E-s188653--73995646c109449f388cd729381931c8.xml/MD5E-s188653--73995646c109449f388cd729381931c8.xml

JHNU/sub-0025602/ses-1/label/catROIs_sub-0025602_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/7P/MD5E-s120110--cbad5c376486fcbb292952540b369a98.mat/MD5E-s120110--cbad5c376486fcbb292952540b369a98.mat

JHNU/sub-0025602/ses-1/label/catROIs_sub-0025602_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/jm/MD5E-s332207--bf3465ed01d34346c71c0283a82d5820.xml/MD5E-s332207--bf3465ed01d34346c71c0283a82d5820.xml

JHNU/sub-0025602/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025602/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/pz/MD5E-s172689--1824997a552cf56e9209eb6fe0ff609e.nii.gz/MD5E-s172689--1824997a552cf56e9209eb6fe0ff609e.nii.gz

JHNU/sub-0025602/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025602/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/8x/MD5E-s193255--44454597fcc934d42d2c475ad906be0c.nii.gz/MD5E-s193255--44454597fcc934d42d2c475ad906be0c.nii.gz

JHNU/sub-0025602/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025602/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/mP/MD5E-s261049--fa75b5da2c348dfe523d323a2886e6a4.nii.gz/MD5E-s261049--fa75b5da2c348dfe523d323a2886e6a4.nii.gz

JHNU/sub-0025602/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025602/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/f4/MD5E-s289508--2264edb4da1154e89fcc006f0c5ab6c0.nii.gz/MD5E-s289508--2264edb4da1154e89fcc006f0c5ab6c0.nii.gz

JHNU/sub-0025602/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025602/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/kq/MD5E-s25104--4c5d574ff4a43d617a8965c9379466b2.nii.gz/MD5E-s25104--4c5d574ff4a43d617a8965c9379466b2.nii.gz

JHNU/sub-0025602/ses-1/mri/aal3_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025602/ses-1/mri/aal3_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/JW/MD5E-s194220--5ef0193e927440967d21d894cf25c462.nii.gz/MD5E-s194220--5ef0193e927440967d21d894cf25c462.nii.gz

JHNU/sub-0025602/ses-1/mri/anatomy3_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025602/ses-1/mri/anatomy3_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/7j/MD5E-s141565--f55b24b6d136ed95288518f5a14b88d5.nii.gz/MD5E-s141565--f55b24b6d136ed95288518f5a14b88d5.nii.gz

JHNU/sub-0025602/ses-1/mri/anon_misub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/pG/MD5E-s6219135--bdbe537822d3b9e2f1d26758c83e4075.nii.gz/MD5E-s6219135--bdbe537822d3b9e2f1d26758c83e4075.nii.gz

JHNU/sub-0025602/ses-1/mri/anon_msub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/1G/MD5E-s13420185--c27dcdb88d6d42ef5cd06a8580261b8f.nii.gz/MD5E-s13420185--c27dcdb88d6d42ef5cd06a8580261b8f.nii.gz

JHNU/sub-0025602/ses-1/mri/cat_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/1j/MD5E-s108501--c6a89730c77a545d7e1660eb6e75650e.nii.gz/MD5E-s108501--c6a89730c77a545d7e1660eb6e75650e.nii.gz

JHNU/sub-0025602/ses-1/mri/cobra_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025602/ses-1/mri/cobra_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/4v/MD5E-s51753--91994132e09c013ee24bbedef7af33e5.nii.gz/MD5E-s51753--91994132e09c013ee24bbedef7af33e5.nii.gz

JHNU/sub-0025602/ses-1/mri/hammers_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025602/ses-1/mri/hammers_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/mg/MD5E-s154313--cb49319d0be324def7eb18362e8ca6f1.nii.gz/MD5E-s154313--cb49319d0be324def7eb18362e8ca6f1.nii.gz

JHNU/sub-0025602/ses-1/mri/ibsr_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025602/ses-1/mri/ibsr_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/Zw/MD5E-s162362--3760b01e5d97c1eb5de70d3b94cb8625.nii.gz/MD5E-s162362--3760b01e5d97c1eb5de70d3b94cb8625.nii.gz

JHNU/sub-0025602/ses-1/mri/it_sub-0025602_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/ZW/MD5E-s283--d97031e06287b00741a5741ceb56b653.mat/MD5E-s283--d97031e06287b00741a5741ceb56b653.mat

JHNU/sub-0025602/ses-1/mri/it_sub-0025602_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/fW/MD5E-s283--bda4be9945e6fd21cbcafc29058de638.mat/MD5E-s283--bda4be9945e6fd21cbcafc29058de638.mat

JHNU/sub-0025602/ses-1/mri/iy_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/P5/MD5E-s48284839--474f0dc49552d216d4d0b37ca443a5b5.nii.gz/MD5E-s48284839--474f0dc49552d216d4d0b37ca443a5b5.nii.gz

JHNU/sub-0025602/ses-1/mri/julichbrain_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

JHNU/sub-0025602/ses-1/mri/julichbrain_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/1W/MD5E-s207871--2c6c499b0743a14258caadb32342f8dc.nii.gz/MD5E-s207871--2c6c499b0743a14258caadb32342f8dc.nii.gz

JHNU/sub-0025602/ses-1/mri/lpba40_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

JHNU/sub-0025602/ses-1/mri/lpba40_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/Qf/MD5E-s150394--877e61b81b781cd9f271abee1ef58405.nii.gz/MD5E-s150394--877e61b81b781cd9f271abee1ef58405.nii.gz

JHNU/sub-0025602/ses-1/mri/m0wp1sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/m0wp2sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/Kf/MD5E-s2350778--3bece16865c90656ae9d4853c0aa294e.nii.gz/MD5E-s2350778--3bece16865c90656ae9d4853c0aa294e.nii.gz

JHNU/sub-0025602/ses-1/mri/m0wp3sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/X5/MD5E-s2352954--2ad2f1bc631f94065d1200ece18bd71a.nii.gz/MD5E-s2352954--2ad2f1bc631f94065d1200ece18bd71a.nii.gz

JHNU/sub-0025602/ses-1/mri/mori_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

JHNU/sub-0025602/ses-1/mri/mori_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/mwp1sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/qZ/MD5E-s2585419--ef40905e37bde7b16e1922e341661ade.nii.gz/MD5E-s2585419--ef40905e37bde7b16e1922e341661ade.nii.gz

JHNU/sub-0025602/ses-1/mri/mwp2sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/mwp3sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/neuromorphometrics_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/neuromorphometrics_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/p0sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/p1sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/p2sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/p3sub-0025602_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025602/ses-1/mri/rp1sub-0025602_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025602/ses-1/mri/rp2sub-0025602_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/rp3sub-0025602_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025602/ses-1/mri/t_sub-0025602_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025602/ses-1/mri/t_sub-0025602_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/thalamus_sub-0025602_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025602/ses-1/mri/thalamus_sub-0025602_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025602/ses-1/mri/wj_sub-0025602_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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