[DATALAD RUNCMD] Compute IACAS/sub-0025467/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025467/ses-1/anat/sub-0025467_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025467/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025467/ses-1/label/catROI_sub-0025467_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/8V/MD5E-s57789--3acb6d2ad58ec844296fd27e99fb929f.mat/MD5E-s57789--3acb6d2ad58ec844296fd27e99fb929f.mat

IACAS/sub-0025467/ses-1/label/catROI_sub-0025467_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/m2/MD5E-s188984--3565477597b5c75df52fbd78260dcbe6.xml/MD5E-s188984--3565477597b5c75df52fbd78260dcbe6.xml

IACAS/sub-0025467/ses-1/label/catROIs_sub-0025467_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/gp/MD5E-s120220--668ed00629324d3d3e6f2a1ba8f92f6a.mat/MD5E-s120220--668ed00629324d3d3e6f2a1ba8f92f6a.mat

IACAS/sub-0025467/ses-1/label/catROIs_sub-0025467_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/X5/MD5E-s332125--f7d84aed65082850983373fec7ed4519.xml/MD5E-s332125--f7d84aed65082850983373fec7ed4519.xml

IACAS/sub-0025467/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025467/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/Gw/MD5E-s154206--2c321919f08e40b3ada643a240ea38d9.nii.gz/MD5E-s154206--2c321919f08e40b3ada643a240ea38d9.nii.gz

IACAS/sub-0025467/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025467/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/6f/MD5E-s170947--93e21604361b6b9339ca2796f9e07008.nii.gz/MD5E-s170947--93e21604361b6b9339ca2796f9e07008.nii.gz

IACAS/sub-0025467/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025467/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/6m/MD5E-s231179--7f136972bad9dccf4a16d6033559f2b4.nii.gz/MD5E-s231179--7f136972bad9dccf4a16d6033559f2b4.nii.gz

IACAS/sub-0025467/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025467/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/z3/MD5E-s256097--026722058351f8bd48144cc24e1bedf7.nii.gz/MD5E-s256097--026722058351f8bd48144cc24e1bedf7.nii.gz

IACAS/sub-0025467/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025467/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/PW/MD5E-s24599--c45517eb9900255d74617e98fa746c04.nii.gz/MD5E-s24599--c45517eb9900255d74617e98fa746c04.nii.gz

IACAS/sub-0025467/ses-1/mri/aal3_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025467/ses-1/mri/aal3_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/1g/MD5E-s171888--1278e2036e48b51b8df15e40d971d543.nii.gz/MD5E-s171888--1278e2036e48b51b8df15e40d971d543.nii.gz

IACAS/sub-0025467/ses-1/mri/anatomy3_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025467/ses-1/mri/anatomy3_sub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/z4/MD5E-s124630--3e3c869b63398e55c42bef8a2da807e6.nii.gz/MD5E-s124630--3e3c869b63398e55c42bef8a2da807e6.nii.gz

IACAS/sub-0025467/ses-1/mri/anon_misub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/Mk/MD5E-s8735641--979c0108d09b64a7ac7a4954922f9f6a.nii.gz/MD5E-s8735641--979c0108d09b64a7ac7a4954922f9f6a.nii.gz

IACAS/sub-0025467/ses-1/mri/anon_msub-0025467_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/jF/MD5E-s9964798--ffc48c7097cd9646b106cba77e537ef2.nii.gz/MD5E-s9964798--ffc48c7097cd9646b106cba77e537ef2.nii.gz

IACAS/sub-0025467/ses-1/mri/cat_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/cobra_sub-0025467_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025467/ses-1/mri/cobra_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/hammers_sub-0025467_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025467/ses-1/mri/hammers_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/ibsr_sub-0025467_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025467/ses-1/mri/ibsr_sub-0025467_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/4P/pg/MD5E-s144215--7eff96c597d00df74b7fa645678f6a26.nii.gz/MD5E-s144215--7eff96c597d00df74b7fa645678f6a26.nii.gz

IACAS/sub-0025467/ses-1/mri/it_sub-0025467_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/81/MD5E-s281--e05200348436c38594e0e4a31fb729c1.mat/MD5E-s281--e05200348436c38594e0e4a31fb729c1.mat

IACAS/sub-0025467/ses-1/mri/it_sub-0025467_ses-1_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/Fm/Pg/MD5E-s284--5d28fff65620fb33a3e633c958c8dde9.mat/MD5E-s284--5d28fff65620fb33a3e633c958c8dde9.mat

IACAS/sub-0025467/ses-1/mri/iy_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/julichbrain_sub-0025467_ses-1_run-1_T1w.csv

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IACAS/sub-0025467/ses-1/mri/julichbrain_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/lpba40_sub-0025467_ses-1_run-1_T1w.csv

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IACAS/sub-0025467/ses-1/mri/lpba40_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/m0wp1sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/m0wp2sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/m0wp3sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/mori_sub-0025467_ses-1_run-1_T1w.csv

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IACAS/sub-0025467/ses-1/mri/mori_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/mwp1sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/mwp2sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/mwp3sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/neuromorphometrics_sub-0025467_ses-1_run-1_T1w.csv

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IACAS/sub-0025467/ses-1/mri/neuromorphometrics_sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/p0sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/p1sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/p2sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/p3sub-0025467_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025467/ses-1/mri/rp1sub-0025467_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025467/ses-1/mri/rp2sub-0025467_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025467/ses-1/mri/rp3sub-0025467_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025467/ses-1/mri/t_sub-0025467_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025467/ses-1/mri/t_sub-0025467_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025467/ses-1/mri/thalamus_sub-0025467_ses-1_run-1_T1w.csv

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IACAS/sub-0025467/ses-1/mri/thalamus_sub-0025467_ses-1_run-1_T1w.nii.gz

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