[DATALAD RUNCMD] Compute BNU_2/sub-0025930/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025930/ses-1/anat/sub-0025930_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025930/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025930/ses-1/label/catROI_sub-0025930_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/7v/MD5E-s58271--fac096e31fd83f203b2d0fce60875b5b.mat/MD5E-s58271--fac096e31fd83f203b2d0fce60875b5b.mat

BNU_2/sub-0025930/ses-1/label/catROI_sub-0025930_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/X5/MD5E-s188560--fffd3528aba84cf2ebee82b2e6d3a16f.xml/MD5E-s188560--fffd3528aba84cf2ebee82b2e6d3a16f.xml

BNU_2/sub-0025930/ses-1/label/catROIs_sub-0025930_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/vP/MD5E-s120041--c75ad02bf42983025df89d8a56e8d777.mat/MD5E-s120041--c75ad02bf42983025df89d8a56e8d777.mat

BNU_2/sub-0025930/ses-1/label/catROIs_sub-0025930_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M0/WX/MD5E-s332137--0ab067c9edb28ccdca373aaa634b8980.xml/MD5E-s332137--0ab067c9edb28ccdca373aaa634b8980.xml

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mm/7q/MD5E-s152962--2db6a5bf9ea9871f1c9edbf70e30906e.nii.gz/MD5E-s152962--2db6a5bf9ea9871f1c9edbf70e30906e.nii.gz

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/12/MD5E-s171098--b8b0a93cf06b890b31242432a2846f51.nii.gz/MD5E-s171098--b8b0a93cf06b890b31242432a2846f51.nii.gz

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/jG/MD5E-s227975--5ba2b4d1d0522b4e8cbdec6e672051be.nii.gz/MD5E-s227975--5ba2b4d1d0522b4e8cbdec6e672051be.nii.gz

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025930/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/Zx/MD5E-s254084--ae4cb614bdae605a8524eaabbe9f6e59.nii.gz/MD5E-s254084--ae4cb614bdae605a8524eaabbe9f6e59.nii.gz

BNU_2/sub-0025930/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025930/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/08/MD5E-s20467--a6a3299e3293c664f4d604588aa52703.nii.gz/MD5E-s20467--a6a3299e3293c664f4d604588aa52703.nii.gz

BNU_2/sub-0025930/ses-1/mri/aal3_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025930/ses-1/mri/aal3_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/ZZ/MD5E-s171863--6e942abc73211efe5a4ec4e290924114.nii.gz/MD5E-s171863--6e942abc73211efe5a4ec4e290924114.nii.gz

BNU_2/sub-0025930/ses-1/mri/anatomy3_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025930/ses-1/mri/anatomy3_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/vz/MD5E-s123642--301eb27e87b038bb7c0ea95dfa248c91.nii.gz/MD5E-s123642--301eb27e87b038bb7c0ea95dfa248c91.nii.gz

BNU_2/sub-0025930/ses-1/mri/anon_misub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/5w/MD5E-s3907374--5d1fcb4dc7439ce6ffb37b1ab3dd44c3.nii.gz/MD5E-s3907374--5d1fcb4dc7439ce6ffb37b1ab3dd44c3.nii.gz

BNU_2/sub-0025930/ses-1/mri/anon_msub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/w4/MD5E-s9315719--ab78f80128dd2b592fefb8816422ee78.nii.gz/MD5E-s9315719--ab78f80128dd2b592fefb8816422ee78.nii.gz

BNU_2/sub-0025930/ses-1/mri/cat_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/xm/MD5E-s92328--235697b165b3f2f45fff61d48ab1a888.nii.gz/MD5E-s92328--235697b165b3f2f45fff61d48ab1a888.nii.gz

BNU_2/sub-0025930/ses-1/mri/cobra_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025930/ses-1/mri/cobra_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/P6/MD5E-s42213--f9a55e1130106937e13c7c3f54f85389.nii.gz/MD5E-s42213--f9a55e1130106937e13c7c3f54f85389.nii.gz

BNU_2/sub-0025930/ses-1/mri/hammers_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025930/ses-1/mri/hammers_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/48/MD5E-s136843--38b359e93329a3ba71a0aef3f154eef9.nii.gz/MD5E-s136843--38b359e93329a3ba71a0aef3f154eef9.nii.gz

BNU_2/sub-0025930/ses-1/mri/ibsr_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025930/ses-1/mri/ibsr_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/92/MD5E-s142989--0abe319e58cc22322a2c78c2ba0fa62f.nii.gz/MD5E-s142989--0abe319e58cc22322a2c78c2ba0fa62f.nii.gz

BNU_2/sub-0025930/ses-1/mri/it_sub-0025930_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/26/MD5E-s283--f16182b7e56bd746b5f68935f6cfaca3.mat/MD5E-s283--f16182b7e56bd746b5f68935f6cfaca3.mat

BNU_2/sub-0025930/ses-1/mri/it_sub-0025930_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/GJ/MD5E-s283--7b9daeb7fd342c113a4385bd50b28d4a.mat/MD5E-s283--7b9daeb7fd342c113a4385bd50b28d4a.mat

BNU_2/sub-0025930/ses-1/mri/iy_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/q5/MD5E-s37373871--1d07f2fe10933af08c53b23fb4d09c2b.nii.gz/MD5E-s37373871--1d07f2fe10933af08c53b23fb4d09c2b.nii.gz

BNU_2/sub-0025930/ses-1/mri/julichbrain_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025930/ses-1/mri/julichbrain_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/38/MD5E-s183800--7a217ce9b2a2faa33060978ffeabe1cc.nii.gz/MD5E-s183800--7a217ce9b2a2faa33060978ffeabe1cc.nii.gz

BNU_2/sub-0025930/ses-1/mri/lpba40_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025930/ses-1/mri/lpba40_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/8g/MD5E-s132964--31b3d555ad1ca886be2858e510b2e7c6.nii.gz/MD5E-s132964--31b3d555ad1ca886be2858e510b2e7c6.nii.gz

BNU_2/sub-0025930/ses-1/mri/m0wp1sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/05/MD5E-s2585880--489a82cadea48b91ddfb3d2d6c38e5bc.nii.gz/MD5E-s2585880--489a82cadea48b91ddfb3d2d6c38e5bc.nii.gz

BNU_2/sub-0025930/ses-1/mri/m0wp2sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/61/MD5E-s2284430--299a4e689b0a7ec20d02a71b4a79d26c.nii.gz/MD5E-s2284430--299a4e689b0a7ec20d02a71b4a79d26c.nii.gz

BNU_2/sub-0025930/ses-1/mri/m0wp3sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/gP/MD5E-s2469314--3a8418f681959d9658624625a404f260.nii.gz/MD5E-s2469314--3a8418f681959d9658624625a404f260.nii.gz

BNU_2/sub-0025930/ses-1/mri/mori_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025930/ses-1/mri/mori_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/vJ/MD5E-s157720--23e81dc130be5ec1622ac8776ef067db.nii.gz/MD5E-s157720--23e81dc130be5ec1622ac8776ef067db.nii.gz

BNU_2/sub-0025930/ses-1/mri/mwp1sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/Vm/MD5E-s2585331--52265b492886f913053c3867137a4182.nii.gz/MD5E-s2585331--52265b492886f913053c3867137a4182.nii.gz

BNU_2/sub-0025930/ses-1/mri/mwp2sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/P7/MD5E-s2280441--8d95cb8e3cc54c70bed5344dc2779dab.nii.gz/MD5E-s2280441--8d95cb8e3cc54c70bed5344dc2779dab.nii.gz

BNU_2/sub-0025930/ses-1/mri/mwp3sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025930/ses-1/mri/neuromorphometrics_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025930/ses-1/mri/neuromorphometrics_sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/K9/MD5E-s187330--7f630371a4621baa32abd2ebae8ef60d.nii.gz/MD5E-s187330--7f630371a4621baa32abd2ebae8ef60d.nii.gz

BNU_2/sub-0025930/ses-1/mri/p0sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/24/MD5E-s799207--a2b9e083a1d0f10697353985a0a6e7ac.nii.gz/MD5E-s799207--a2b9e083a1d0f10697353985a0a6e7ac.nii.gz

BNU_2/sub-0025930/ses-1/mri/p1sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/7F/MD5E-s818583--3f01d6ca8e3eef50ac34287ce42a470a.nii.gz/MD5E-s818583--3f01d6ca8e3eef50ac34287ce42a470a.nii.gz

BNU_2/sub-0025930/ses-1/mri/p2sub-0025930_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/pV/MD5E-s555828--01e231fcc1e488cf6b768d0c3669972f.nii.gz/MD5E-s555828--01e231fcc1e488cf6b768d0c3669972f.nii.gz

BNU_2/sub-0025930/ses-1/mri/p3sub-0025930_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025930/ses-1/mri/rp1sub-0025930_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025930/ses-1/mri/rp2sub-0025930_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025930/ses-1/mri/rp3sub-0025930_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025930/ses-1/mri/t_sub-0025930_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/03/MD5E-s285--10f45ac61adb36b9f0bc679db803474c.mat/MD5E-s285--10f45ac61adb36b9f0bc679db803474c.mat

BNU_2/sub-0025930/ses-1/mri/t_sub-0025930_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/wX/MD5E-s284--0aed9a7e8c9e7f6bb547e3696bf7d467.mat/MD5E-s284--0aed9a7e8c9e7f6bb547e3696bf7d467.mat

BNU_2/sub-0025930/ses-1/mri/thalamus_sub-0025930_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025930/ses-1/mri/thalamus_sub-0025930_ses-1_run-1_T1w.nii.gz

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