[DATALAD RUNCMD] Compute BNU_2/sub-0025964/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025964/ses-2/anat/sub-0025964_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025964/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025964/ses-2/label/catROI_sub-0025964_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/3G/MD5E-s57886--8ae84a26e3bae1e9bcce0c14a4bb3639.mat/MD5E-s57886--8ae84a26e3bae1e9bcce0c14a4bb3639.mat

BNU_2/sub-0025964/ses-2/label/catROI_sub-0025964_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/27/MD5E-s188714--28a270bbe835600bda805d8ff3dde8b3.xml/MD5E-s188714--28a270bbe835600bda805d8ff3dde8b3.xml

BNU_2/sub-0025964/ses-2/label/catROIs_sub-0025964_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/Q1/MD5E-s120174--6b5096f132187685c97c7b1e7ecd772b.mat/MD5E-s120174--6b5096f132187685c97c7b1e7ecd772b.mat

BNU_2/sub-0025964/ses-2/label/catROIs_sub-0025964_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/1z/MD5E-s332121--1c355287bde745b6073508f84a29aab4.xml/MD5E-s332121--1c355287bde745b6073508f84a29aab4.xml

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/mX/MD5E-s166770--6726a2f541efe1ea5b4c18d970893ad2.nii.gz/MD5E-s166770--6726a2f541efe1ea5b4c18d970893ad2.nii.gz

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/jf/MD5E-s184798--74df8b82702056a7e8aa604a57d215f3.nii.gz/MD5E-s184798--74df8b82702056a7e8aa604a57d215f3.nii.gz

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/Q4/MD5E-s250455--a684b600e926f901351b0df3a9b205f8.nii.gz/MD5E-s250455--a684b600e926f901351b0df3a9b205f8.nii.gz

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025964/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/VJ/MD5E-s276543--4c98b1e98edfd8f342b0408bbcb4a6e8.nii.gz/MD5E-s276543--4c98b1e98edfd8f342b0408bbcb4a6e8.nii.gz

BNU_2/sub-0025964/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025964/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/3P/MD5E-s25119--46f52899021211dae3e1777ba5ca74ab.nii.gz/MD5E-s25119--46f52899021211dae3e1777ba5ca74ab.nii.gz

BNU_2/sub-0025964/ses-2/mri/aal3_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025964/ses-2/mri/aal3_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/g5/MD5E-s188173--683a11f5db76585a2557d008e48c59e6.nii.gz/MD5E-s188173--683a11f5db76585a2557d008e48c59e6.nii.gz

BNU_2/sub-0025964/ses-2/mri/anatomy3_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025964/ses-2/mri/anatomy3_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/vj/MD5E-s134319--1b412c5652fa7edf281e67252285e897.nii.gz/MD5E-s134319--1b412c5652fa7edf281e67252285e897.nii.gz

BNU_2/sub-0025964/ses-2/mri/anon_misub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/7x/MD5E-s4758164--d247c3c58b5410ddead842b96c534037.nii.gz/MD5E-s4758164--d247c3c58b5410ddead842b96c534037.nii.gz

BNU_2/sub-0025964/ses-2/mri/anon_msub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/kf/MD5E-s10552637--3c0f10ef8acd55b2a053e9932b4a7c5e.nii.gz/MD5E-s10552637--3c0f10ef8acd55b2a053e9932b4a7c5e.nii.gz

BNU_2/sub-0025964/ses-2/mri/cat_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/qG/MD5E-s100165--472cb60c17fc81654fec3e40a30ab875.nii.gz/MD5E-s100165--472cb60c17fc81654fec3e40a30ab875.nii.gz

BNU_2/sub-0025964/ses-2/mri/cobra_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025964/ses-2/mri/cobra_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/fz/MD5E-s50689--85de01ce48da0cc7e01640ba57aee8ed.nii.gz/MD5E-s50689--85de01ce48da0cc7e01640ba57aee8ed.nii.gz

BNU_2/sub-0025964/ses-2/mri/hammers_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025964/ses-2/mri/hammers_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/VW/MD5E-s149587--8065a2551dcb6dae82586fa17cff713b.nii.gz/MD5E-s149587--8065a2551dcb6dae82586fa17cff713b.nii.gz

BNU_2/sub-0025964/ses-2/mri/ibsr_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025964/ses-2/mri/ibsr_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/mm/MD5E-s156238--f24ffdd3a63a7e2d113cd78248fe6b84.nii.gz/MD5E-s156238--f24ffdd3a63a7e2d113cd78248fe6b84.nii.gz

BNU_2/sub-0025964/ses-2/mri/it_sub-0025964_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/59/MD5E-s284--6540c94e36d746037fd714c509dfda49.mat/MD5E-s284--6540c94e36d746037fd714c509dfda49.mat

BNU_2/sub-0025964/ses-2/mri/it_sub-0025964_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/JF/MD5E-s284--00c3c6e2e17d875656f102f22a64fc0c.mat/MD5E-s284--00c3c6e2e17d875656f102f22a64fc0c.mat

BNU_2/sub-0025964/ses-2/mri/iy_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/zV/MD5E-s49698433--2bd4fabf54470135ee960ce007292f46.nii.gz/MD5E-s49698433--2bd4fabf54470135ee960ce007292f46.nii.gz

BNU_2/sub-0025964/ses-2/mri/julichbrain_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025964/ses-2/mri/julichbrain_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/vX/MD5E-s198206--c0c5da789ce4a35f0fb4e35fa945663e.nii.gz/MD5E-s198206--c0c5da789ce4a35f0fb4e35fa945663e.nii.gz

BNU_2/sub-0025964/ses-2/mri/lpba40_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025964/ses-2/mri/lpba40_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/mj/MD5E-s146485--b9ee20c54400a2edaff86a164af8ea11.nii.gz/MD5E-s146485--b9ee20c54400a2edaff86a164af8ea11.nii.gz

BNU_2/sub-0025964/ses-2/mri/m0wp1sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/FX/MD5E-s2563977--6176b2c93d10147e1fcc2f9e6c966e02.nii.gz/MD5E-s2563977--6176b2c93d10147e1fcc2f9e6c966e02.nii.gz

BNU_2/sub-0025964/ses-2/mri/m0wp2sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/3w/MD5E-s2278349--642753cc364b59a59081266b335ad4d1.nii.gz/MD5E-s2278349--642753cc364b59a59081266b335ad4d1.nii.gz

BNU_2/sub-0025964/ses-2/mri/m0wp3sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/x1/MD5E-s2513842--2231c8479e5760986caaf92bc4bf96ba.nii.gz/MD5E-s2513842--2231c8479e5760986caaf92bc4bf96ba.nii.gz

BNU_2/sub-0025964/ses-2/mri/mori_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025964/ses-2/mri/mori_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/ZF/MD5E-s174828--20bd4da2975c8608e42e6033738f88ba.nii.gz/MD5E-s174828--20bd4da2975c8608e42e6033738f88ba.nii.gz

BNU_2/sub-0025964/ses-2/mri/mwp1sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/XG/MD5E-s2565053--6f84106f024393939c07fe6da0402212.nii.gz/MD5E-s2565053--6f84106f024393939c07fe6da0402212.nii.gz

BNU_2/sub-0025964/ses-2/mri/mwp2sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/0P/MD5E-s2274678--dade96f879338d1a38cc60d8ee7cfe49.nii.gz/MD5E-s2274678--dade96f879338d1a38cc60d8ee7cfe49.nii.gz

BNU_2/sub-0025964/ses-2/mri/mwp3sub-0025964_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025964/ses-2/mri/neuromorphometrics_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025964/ses-2/mri/neuromorphometrics_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025964/ses-2/mri/p0sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/GF/MD5E-s635108--83a06b9f521a7f83609acacf5d0bd92b.nii.gz/MD5E-s635108--83a06b9f521a7f83609acacf5d0bd92b.nii.gz

BNU_2/sub-0025964/ses-2/mri/p1sub-0025964_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025964/ses-2/mri/p2sub-0025964_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025964/ses-2/mri/p3sub-0025964_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025964/ses-2/mri/rp1sub-0025964_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025964/ses-2/mri/rp2sub-0025964_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025964/ses-2/mri/rp3sub-0025964_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025964/ses-2/mri/t_sub-0025964_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025964/ses-2/mri/t_sub-0025964_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025964/ses-2/mri/thalamus_sub-0025964_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025964/ses-2/mri/thalamus_sub-0025964_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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