[DATALAD RUNCMD] Compute IACAS/sub-0025480/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025480/ses-1/anat/sub-0025480_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025480/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025480/ses-1/label/catROI_sub-0025480_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/4Z/MD5E-s58024--f028bece285617a550caf4ce21602672.mat/MD5E-s58024--f028bece285617a550caf4ce21602672.mat

IACAS/sub-0025480/ses-1/label/catROI_sub-0025480_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/jj/MD5E-s188879--bded4e5650ea358fd22d15050ea2e334.xml/MD5E-s188879--bded4e5650ea358fd22d15050ea2e334.xml

IACAS/sub-0025480/ses-1/label/catROIs_sub-0025480_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/vz/MD5E-s120075--d029009bcc87b62945f9d80e49eb7f48.mat/MD5E-s120075--d029009bcc87b62945f9d80e49eb7f48.mat

IACAS/sub-0025480/ses-1/label/catROIs_sub-0025480_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/5G/MD5E-s332110--ed154f2138d54dab67e8c531b094f030.xml/MD5E-s332110--ed154f2138d54dab67e8c531b094f030.xml

IACAS/sub-0025480/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025480/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/fx/MD5E-s173188--5167233b8e22cdec4c53a550ffdabb72.nii.gz/MD5E-s173188--5167233b8e22cdec4c53a550ffdabb72.nii.gz

IACAS/sub-0025480/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025480/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/9Q/MD5E-s193670--98bc3b42a1a5059f1773d843565a9300.nii.gz/MD5E-s193670--98bc3b42a1a5059f1773d843565a9300.nii.gz

IACAS/sub-0025480/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025480/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/Gx/MD5E-s261478--94908a4539550af413dbacc328bbdfe2.nii.gz/MD5E-s261478--94908a4539550af413dbacc328bbdfe2.nii.gz

IACAS/sub-0025480/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025480/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/Vm/MD5E-s291102--f18ec3eb8234f3bfc2791b36a8088f11.nii.gz/MD5E-s291102--f18ec3eb8234f3bfc2791b36a8088f11.nii.gz

IACAS/sub-0025480/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025480/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/zg/MD5E-s25952--3e0a24382b33de565cffc998e12fda3c.nii.gz/MD5E-s25952--3e0a24382b33de565cffc998e12fda3c.nii.gz

IACAS/sub-0025480/ses-1/mri/aal3_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025480/ses-1/mri/aal3_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/W4/MD5E-s193316--a673f718f199a215f3a1d38e7cdb2458.nii.gz/MD5E-s193316--a673f718f199a215f3a1d38e7cdb2458.nii.gz

IACAS/sub-0025480/ses-1/mri/anatomy3_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025480/ses-1/mri/anatomy3_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/M6/MD5E-s140972--d0b3dd520b5d636c668a66469549da10.nii.gz/MD5E-s140972--d0b3dd520b5d636c668a66469549da10.nii.gz

IACAS/sub-0025480/ses-1/mri/anon_misub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/Vw/MD5E-s8175456--6d3f68792866943766a0f8653f975347.nii.gz/MD5E-s8175456--6d3f68792866943766a0f8653f975347.nii.gz

IACAS/sub-0025480/ses-1/mri/anon_msub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/Pw/MD5E-s8120246--336675b9d74ec943b2af7f385f0d6042.nii.gz/MD5E-s8120246--336675b9d74ec943b2af7f385f0d6042.nii.gz

IACAS/sub-0025480/ses-1/mri/cat_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/Z3/MD5E-s107846--d04baafc5bad7bb18e4dec6279dd9b0a.nii.gz/MD5E-s107846--d04baafc5bad7bb18e4dec6279dd9b0a.nii.gz

IACAS/sub-0025480/ses-1/mri/cobra_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025480/ses-1/mri/cobra_sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/hammers_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025480/ses-1/mri/hammers_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5G/M6/MD5E-s152465--9b5595dc1261479abe4930fee5011246.nii.gz/MD5E-s152465--9b5595dc1261479abe4930fee5011246.nii.gz

IACAS/sub-0025480/ses-1/mri/ibsr_sub-0025480_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025480/ses-1/mri/ibsr_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/pG/MD5E-s160832--54990455bcd43ff54c8d2f12e266b12f.nii.gz/MD5E-s160832--54990455bcd43ff54c8d2f12e266b12f.nii.gz

IACAS/sub-0025480/ses-1/mri/it_sub-0025480_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/ZX/MD5E-s282--ac477b8a75b16cf92f66a7a42e870865.mat/MD5E-s282--ac477b8a75b16cf92f66a7a42e870865.mat

IACAS/sub-0025480/ses-1/mri/it_sub-0025480_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/q6/MD5E-s284--27e65e8222df1d8a21e249558c40791a.mat/MD5E-s284--27e65e8222df1d8a21e249558c40791a.mat

IACAS/sub-0025480/ses-1/mri/iy_sub-0025480_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/0G/MD5E-s50161813--e8f458bae8726c424510b7baa9072fce.nii.gz/MD5E-s50161813--e8f458bae8726c424510b7baa9072fce.nii.gz

IACAS/sub-0025480/ses-1/mri/julichbrain_sub-0025480_ses-1_run-1_T1w.csv

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IACAS/sub-0025480/ses-1/mri/julichbrain_sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/lpba40_sub-0025480_ses-1_run-1_T1w.csv

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IACAS/sub-0025480/ses-1/mri/lpba40_sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/m0wp1sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/m0wp2sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/m0wp3sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/mori_sub-0025480_ses-1_run-1_T1w.csv

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IACAS/sub-0025480/ses-1/mri/mori_sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/mwp1sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/mwp2sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/mwp3sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/neuromorphometrics_sub-0025480_ses-1_run-1_T1w.csv

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IACAS/sub-0025480/ses-1/mri/neuromorphometrics_sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/p0sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/p1sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/p2sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/p3sub-0025480_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025480/ses-1/mri/rp1sub-0025480_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025480/ses-1/mri/rp2sub-0025480_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025480/ses-1/mri/rp3sub-0025480_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025480/ses-1/mri/t_sub-0025480_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025480/ses-1/mri/t_sub-0025480_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025480/ses-1/mri/thalamus_sub-0025480_ses-1_run-1_T1w.csv

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IACAS/sub-0025480/ses-1/mri/thalamus_sub-0025480_ses-1_run-1_T1w.nii.gz

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