[DATALAD RUNCMD] Compute SWU_1/sub-0027209/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027209/ses-1/anat/sub-0027209_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027209/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027209/ses-1/label/catROI_sub-0027209_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/G1/MD5E-s61211--bb24b6629e2191823174303e5bf498e6.mat/MD5E-s61211--bb24b6629e2191823174303e5bf498e6.mat

SWU_1/sub-0027209/ses-1/label/catROI_sub-0027209_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/QQ/MD5E-s188939--2de83d0154ab2650fb6632fa2959e2d5.xml/MD5E-s188939--2de83d0154ab2650fb6632fa2959e2d5.xml

SWU_1/sub-0027209/ses-1/label/catROI_sub-0027209_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/88/MP/MD5E-s61242--aea8ade2123e41f25a1ba85f13daed58.mat/MD5E-s61242--aea8ade2123e41f25a1ba85f13daed58.mat

SWU_1/sub-0027209/ses-1/label/catROI_sub-0027209_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9k/QV/MD5E-s189007--51624209e1f73a47868a3f28019b7440.xml/MD5E-s189007--51624209e1f73a47868a3f28019b7440.xml

SWU_1/sub-0027209/ses-1/label/catROIs_sub-0027209_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/PZ/MD5E-s120059--3d87d95024a0863e5375b8a6ad64d857.mat/MD5E-s120059--3d87d95024a0863e5375b8a6ad64d857.mat

SWU_1/sub-0027209/ses-1/label/catROIs_sub-0027209_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/WX/MD5E-s332116--cffef1e83ecebea9441ba1f931caba28.xml/MD5E-s332116--cffef1e83ecebea9441ba1f931caba28.xml

SWU_1/sub-0027209/ses-1/label/catROIs_sub-0027209_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jQ/0Z/MD5E-s120117--ab2315edde49fcc68d0ed114ff1496da.mat/MD5E-s120117--ab2315edde49fcc68d0ed114ff1496da.mat

SWU_1/sub-0027209/ses-1/label/catROIs_sub-0027209_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K4/J2/MD5E-s332213--9df020232109813fe4e97b1844b9e6a7.xml/MD5E-s332213--9df020232109813fe4e97b1844b9e6a7.xml

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/3K/MD5E-s167855--c835d340c94167ba8af80612e20f4a06.nii.gz/MD5E-s167855--c835d340c94167ba8af80612e20f4a06.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w5/xw/MD5E-s167742--c43b519dc2a1d1f24271cf5f7241c901.nii.gz/MD5E-s167742--c43b519dc2a1d1f24271cf5f7241c901.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/PM/MD5E-s187327--3bc3a63dec32eeeb2fec5588f17e388a.nii.gz/MD5E-s187327--3bc3a63dec32eeeb2fec5588f17e388a.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Ff/qW/MD5E-s187220--e25d01db978daa776b99dd9725845258.nii.gz/MD5E-s187220--e25d01db978daa776b99dd9725845258.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/j6/MD5E-s252440--710776a74c5528f41ccff52cb95aee39.nii.gz/MD5E-s252440--710776a74c5528f41ccff52cb95aee39.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8F/MW/MD5E-s252795--73d1c8dfc4c7df1a241ee060e2d9af77.nii.gz/MD5E-s252795--73d1c8dfc4c7df1a241ee060e2d9af77.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/GX/MD5E-s280426--631ad0b980ee638c10bf2b61279c6c79.nii.gz/MD5E-s280426--631ad0b980ee638c10bf2b61279c6c79.nii.gz

SWU_1/sub-0027209/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jF/5x/MD5E-s280274--03ed8bcce4ba693ae119fb3883ae3059.nii.gz/MD5E-s280274--03ed8bcce4ba693ae119fb3883ae3059.nii.gz

SWU_1/sub-0027209/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/2F/MD5E-s25256--2c43b956124d4c095c323a52353bc158.nii.gz/MD5E-s25256--2c43b956124d4c095c323a52353bc158.nii.gz

SWU_1/sub-0027209/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0X/g5/MD5E-s25402--111a4e2adb04ec31ca8c7a8c95f7df60.nii.gz/MD5E-s25402--111a4e2adb04ec31ca8c7a8c95f7df60.nii.gz

SWU_1/sub-0027209/ses-1/mri/aal3_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/WP/MD5E-s188015--e77a867e144229f90dbf0b1307f7ed0b.nii.gz/MD5E-s188015--e77a867e144229f90dbf0b1307f7ed0b.nii.gz

SWU_1/sub-0027209/ses-1/mri/aal3_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6M/PZ/MD5E-s188213--2ef4dc7ebedd8629037e5847e96c335c.nii.gz/MD5E-s188213--2ef4dc7ebedd8629037e5847e96c335c.nii.gz

SWU_1/sub-0027209/ses-1/mri/anatomy3_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/P7/MD5E-s137089--310b1e62fd431ccb4b0712e24d718d3e.nii.gz/MD5E-s137089--310b1e62fd431ccb4b0712e24d718d3e.nii.gz

SWU_1/sub-0027209/ses-1/mri/anatomy3_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8p/X1/MD5E-s136912--ee1799de9236b6d6727cc60eddff0469.nii.gz/MD5E-s136912--ee1799de9236b6d6727cc60eddff0469.nii.gz

SWU_1/sub-0027209/ses-1/mri/anon_misub-0027209_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/KZ/JM/MD5E-s9271677--72b1f4bbea0f631b3b3681b222b154b8.nii.gz/MD5E-s9271677--72b1f4bbea0f631b3b3681b222b154b8.nii.gz

SWU_1/sub-0027209/ses-1/mri/anon_misub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qQ/X6/MD5E-s9276669--13285186f00582016d1c596a5a4fa294.nii.gz/MD5E-s9276669--13285186f00582016d1c596a5a4fa294.nii.gz

SWU_1/sub-0027209/ses-1/mri/anon_msub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/anon_msub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f2/Zk/MD5E-s10508116--e87f91c929f8cda2b7a63fcb9e04bbcc.nii.gz/MD5E-s10508116--e87f91c929f8cda2b7a63fcb9e04bbcc.nii.gz

SWU_1/sub-0027209/ses-1/mri/cat_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/26/MD5E-s102591--bd86ad2ebe1234d7df23fea708316d12.nii.gz/MD5E-s102591--bd86ad2ebe1234d7df23fea708316d12.nii.gz

SWU_1/sub-0027209/ses-1/mri/cat_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FZ/pK/MD5E-s102453--03a219d4a2910e27b7acc98edaadc5d7.nii.gz/MD5E-s102453--03a219d4a2910e27b7acc98edaadc5d7.nii.gz

SWU_1/sub-0027209/ses-1/mri/cobra_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/z2/MD5E-s48439--7fbb3bb484b50cae337c73f267782499.nii.gz/MD5E-s48439--7fbb3bb484b50cae337c73f267782499.nii.gz

SWU_1/sub-0027209/ses-1/mri/cobra_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027209/ses-1/mri/hammers_sub-0027209_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027209/ses-1/mri/hammers_sub-0027209_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027209/ses-1/mri/ibsr_sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/ibsr_sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/it_sub-0027209_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/gV/MD5E-s281--ec500dba7ca57923b44a6bc450f9a714.mat/MD5E-s281--ec500dba7ca57923b44a6bc450f9a714.mat

SWU_1/sub-0027209/ses-1/mri/it_sub-0027209_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027209/ses-1/mri/it_sub-0027209_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027209/ses-1/mri/it_sub-0027209_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027209/ses-1/mri/iy_sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/iy_sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/julichbrain_sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/julichbrain_sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/lpba40_sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/lpba40_sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp1sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp1sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp2sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp2sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp3sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/m0wp3sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/mori_sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/mori_sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/mwp1sub-0027209_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/mwp1sub-0027209_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027209/ses-1/mri/mwp2sub-0027209_ses-1_run-1_T1w.nii.gz

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