[DATALAD RUNCMD] Compute SWU_1/sub-0027213/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027213/ses-3/anat/sub-0027213_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027213/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027213/ses-3/label/catROI_sub-0027213_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/qv/MD5E-s61207--0fe1b1243d5f26e62af8e8509751aaf1.mat/MD5E-s61207--0fe1b1243d5f26e62af8e8509751aaf1.mat

SWU_1/sub-0027213/ses-3/label/catROI_sub-0027213_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/M8/MD5E-s188787--007c293b3d6958a2fd9b240ef303e8cb.xml/MD5E-s188787--007c293b3d6958a2fd9b240ef303e8cb.xml

SWU_1/sub-0027213/ses-3/label/catROI_sub-0027213_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fx/1Z/MD5E-s61282--050539bbf892cbe2b538afa6f064c6b3.mat/MD5E-s61282--050539bbf892cbe2b538afa6f064c6b3.mat

SWU_1/sub-0027213/ses-3/label/catROI_sub-0027213_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2v/7Q/MD5E-s188877--5f642546e943e3d1d23a757097cb213b.xml/MD5E-s188877--5f642546e943e3d1d23a757097cb213b.xml

SWU_1/sub-0027213/ses-3/label/catROIs_sub-0027213_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/Km/MD5E-s120067--542a4b6da9caf84055c92e9b614fa8f7.mat/MD5E-s120067--542a4b6da9caf84055c92e9b614fa8f7.mat

SWU_1/sub-0027213/ses-3/label/catROIs_sub-0027213_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/3Q/MD5E-s332111--5a1bcb6a7f9ce1af1882655e8d1f47be.xml/MD5E-s332111--5a1bcb6a7f9ce1af1882655e8d1f47be.xml

SWU_1/sub-0027213/ses-3/label/catROIs_sub-0027213_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qx/93/MD5E-s120096--1d297a269b82660307cfa960ebb5496e.mat/MD5E-s120096--1d297a269b82660307cfa960ebb5496e.mat

SWU_1/sub-0027213/ses-3/label/catROIs_sub-0027213_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z9/2X/MD5E-s332153--5e8c38ba748b841dc56b3787e9691d59.xml/MD5E-s332153--5e8c38ba748b841dc56b3787e9691d59.xml

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/VJ/MD5E-s165713--7c9c08a9f606cedde95f1ea6ddf6753c.nii.gz/MD5E-s165713--7c9c08a9f606cedde95f1ea6ddf6753c.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jm/wj/MD5E-s168830--f076e17d61a53b491f731ef68b7f0fbb.nii.gz/MD5E-s168830--f076e17d61a53b491f731ef68b7f0fbb.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/mG/MD5E-s184651--f2666b06048140110818c891c87a251b.nii.gz/MD5E-s184651--f2666b06048140110818c891c87a251b.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x0/8G/MD5E-s188437--ada92143395a7b1680b2b07cc9057b69.nii.gz/MD5E-s188437--ada92143395a7b1680b2b07cc9057b69.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/jz/MD5E-s249598--85e464cc05dc4807b9ce17fef2a8eec9.nii.gz/MD5E-s249598--85e464cc05dc4807b9ce17fef2a8eec9.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gQ/m9/MD5E-s254383--4039134a9cd2cf90d897ba8923d4b170.nii.gz/MD5E-s254383--4039134a9cd2cf90d897ba8923d4b170.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/ZM/MD5E-s277064--5d62d38c862d48bd9e31c7987f4eaea9.nii.gz/MD5E-s277064--5d62d38c862d48bd9e31c7987f4eaea9.nii.gz

SWU_1/sub-0027213/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fw/6m/MD5E-s281913--6516c4f93a7cb331e86e4e0b1da98d69.nii.gz/MD5E-s281913--6516c4f93a7cb331e86e4e0b1da98d69.nii.gz

SWU_1/sub-0027213/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/Zj/MD5E-s25571--7ac00af5754786f629893142416f01a7.nii.gz/MD5E-s25571--7ac00af5754786f629893142416f01a7.nii.gz

SWU_1/sub-0027213/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xJ/V1/MD5E-s25826--019fbe3e5dc8a7de6088019e1e7e812b.nii.gz/MD5E-s25826--019fbe3e5dc8a7de6088019e1e7e812b.nii.gz

SWU_1/sub-0027213/ses-3/mri/aal3_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/5k/MD5E-s188047--9d991b4f70ead1015f37eba788be6231.nii.gz/MD5E-s188047--9d991b4f70ead1015f37eba788be6231.nii.gz

SWU_1/sub-0027213/ses-3/mri/aal3_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gP/8z/MD5E-s191486--c6b7e6746a16695e2afa908259ab1456.nii.gz/MD5E-s191486--c6b7e6746a16695e2afa908259ab1456.nii.gz

SWU_1/sub-0027213/ses-3/mri/anatomy3_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/4F/MD5E-s136871--72d429c580e0925b6762c6e068af0e79.nii.gz/MD5E-s136871--72d429c580e0925b6762c6e068af0e79.nii.gz

SWU_1/sub-0027213/ses-3/mri/anatomy3_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p2/pw/MD5E-s139723--7e8eb26c508f7b726afe3373861b471d.nii.gz/MD5E-s139723--7e8eb26c508f7b726afe3373861b471d.nii.gz

SWU_1/sub-0027213/ses-3/mri/anon_misub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/Q9/MD5E-s8091278--e33f84cdc1110da8de1d8ba467a6a049.nii.gz/MD5E-s8091278--e33f84cdc1110da8de1d8ba467a6a049.nii.gz

SWU_1/sub-0027213/ses-3/mri/anon_misub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/anon_msub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027213/ses-3/mri/anon_msub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/cat_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/V1/MD5E-s99907--6aa32c95534565a0470b6e639291a707.nii.gz/MD5E-s99907--6aa32c95534565a0470b6e639291a707.nii.gz

SWU_1/sub-0027213/ses-3/mri/cat_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/cobra_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/mQ/MD5E-s48693--1dc691074cdb108354eccd24990b0ef7.nii.gz/MD5E-s48693--1dc691074cdb108354eccd24990b0ef7.nii.gz

SWU_1/sub-0027213/ses-3/mri/cobra_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/hammers_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/F3/MD5E-s148407--ee87604d8de60bac273c78b0230f601f.nii.gz/MD5E-s148407--ee87604d8de60bac273c78b0230f601f.nii.gz

SWU_1/sub-0027213/ses-3/mri/hammers_sub-0027213_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/ibsr_sub-0027213_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027213/ses-3/mri/ibsr_sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/it_sub-0027213_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027213/ses-3/mri/it_sub-0027213_ses-3_run-1_T1w_rigid_reorient.mat

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SWU_1/sub-0027213/ses-3/mri/it_sub-0027213_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/it_sub-0027213_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027213/ses-3/mri/iy_sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/iy_sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/julichbrain_sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/julichbrain_sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/lpba40_sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/lpba40_sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp1sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp1sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp2sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp2sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp3sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/m0wp3sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/mori_sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/mori_sub-0027213_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/mwp1sub-0027213_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027213/ses-3/mri/mwp1sub-0027213_ses-3_run-2_T1w.nii.gz

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