[DATALAD RUNCMD] Compute BNU_2/sub-0025947/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025947/ses-2/anat/sub-0025947_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025947/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025947/ses-2/label/catROI_sub-0025947_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/Gq/MD5E-s58234--13af2607c74927d2ca82349fba8724a2.mat/MD5E-s58234--13af2607c74927d2ca82349fba8724a2.mat

BNU_2/sub-0025947/ses-2/label/catROI_sub-0025947_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/1w/MD5E-s188532--c4d6d641b2711bbd80159c02c180e895.xml/MD5E-s188532--c4d6d641b2711bbd80159c02c180e895.xml

BNU_2/sub-0025947/ses-2/label/catROIs_sub-0025947_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/7q/MD5E-s120105--9a9fe5076d92d792feff86089d9e63b2.mat/MD5E-s120105--9a9fe5076d92d792feff86089d9e63b2.mat

BNU_2/sub-0025947/ses-2/label/catROIs_sub-0025947_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/X9/MD5E-s332111--c1b1fbf0bdb7120c9480ecf1e0ea4a27.xml/MD5E-s332111--c1b1fbf0bdb7120c9480ecf1e0ea4a27.xml

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/9M/MD5E-s180646--f53ddfb8310b3a5a3b4c2e460fd225e4.nii.gz/MD5E-s180646--f53ddfb8310b3a5a3b4c2e460fd225e4.nii.gz

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/8k/MD5E-s202840--411db5095b938b536276e7d3509d744e.nii.gz/MD5E-s202840--411db5095b938b536276e7d3509d744e.nii.gz

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/QG/MD5E-s272752--daa7407818b02cd8996d90f38d28132f.nii.gz/MD5E-s272752--daa7407818b02cd8996d90f38d28132f.nii.gz

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025947/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/F3/MD5E-s302398--794e3717736128d99269487515da6795.nii.gz/MD5E-s302398--794e3717736128d99269487515da6795.nii.gz

BNU_2/sub-0025947/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025947/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/FX/MD5E-s26781--320f31432084361a6ec031f0cc3e69b0.nii.gz/MD5E-s26781--320f31432084361a6ec031f0cc3e69b0.nii.gz

BNU_2/sub-0025947/ses-2/mri/aal3_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025947/ses-2/mri/aal3_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/ZF/MD5E-s202733--483617866431830723fc0f3bb61bda7a.nii.gz/MD5E-s202733--483617866431830723fc0f3bb61bda7a.nii.gz

BNU_2/sub-0025947/ses-2/mri/anatomy3_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025947/ses-2/mri/anatomy3_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/fg/MD5E-s148340--06073b4b366efd17f1f0bccc074249cf.nii.gz/MD5E-s148340--06073b4b366efd17f1f0bccc074249cf.nii.gz

BNU_2/sub-0025947/ses-2/mri/anon_misub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/m4/MD5E-s5295579--5d0640c7f643a11a3b3982642af76e19.nii.gz/MD5E-s5295579--5d0640c7f643a11a3b3982642af76e19.nii.gz

BNU_2/sub-0025947/ses-2/mri/anon_msub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/G5/MD5E-s11189450--3e0eb13fd9f16b4497b0d8a1a26115e1.nii.gz/MD5E-s11189450--3e0eb13fd9f16b4497b0d8a1a26115e1.nii.gz

BNU_2/sub-0025947/ses-2/mri/cat_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/jW/MD5E-s109059--6679ea3302a487fb7572e7cefe0e6c2a.nii.gz/MD5E-s109059--6679ea3302a487fb7572e7cefe0e6c2a.nii.gz

BNU_2/sub-0025947/ses-2/mri/cobra_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025947/ses-2/mri/cobra_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/Xj/MD5E-s51065--88b0aff658425fe4396dd3abec32ca07.nii.gz/MD5E-s51065--88b0aff658425fe4396dd3abec32ca07.nii.gz

BNU_2/sub-0025947/ses-2/mri/hammers_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025947/ses-2/mri/hammers_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/9K/MD5E-s159951--8a58c9d90f992de07535d3db9ee3a48d.nii.gz/MD5E-s159951--8a58c9d90f992de07535d3db9ee3a48d.nii.gz

BNU_2/sub-0025947/ses-2/mri/ibsr_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025947/ses-2/mri/ibsr_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/0g/MD5E-s168337--d041b8049d085ade28f45c27566a433e.nii.gz/MD5E-s168337--d041b8049d085ade28f45c27566a433e.nii.gz

BNU_2/sub-0025947/ses-2/mri/it_sub-0025947_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qp/X2/MD5E-s284--99aa7a83984fa0d2d674f72499c7ff55.mat/MD5E-s284--99aa7a83984fa0d2d674f72499c7ff55.mat

BNU_2/sub-0025947/ses-2/mri/it_sub-0025947_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/j2/MD5E-s284--1a725ea2bf875097b4f467e5807a334e.mat/MD5E-s284--1a725ea2bf875097b4f467e5807a334e.mat

BNU_2/sub-0025947/ses-2/mri/iy_sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/vP/MD5E-s53586614--8d628b38d73456bce52b61bf5df5df2e.nii.gz/MD5E-s53586614--8d628b38d73456bce52b61bf5df5df2e.nii.gz

BNU_2/sub-0025947/ses-2/mri/julichbrain_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025947/ses-2/mri/julichbrain_sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/lpba40_sub-0025947_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025947/ses-2/mri/lpba40_sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/m0wp1sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/M8/MD5E-s2571992--ea62fe4238c3f62c047a7a513770126d.nii.gz/MD5E-s2571992--ea62fe4238c3f62c047a7a513770126d.nii.gz

BNU_2/sub-0025947/ses-2/mri/m0wp2sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/m0wp3sub-0025947_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025947/ses-2/mri/mori_sub-0025947_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025947/ses-2/mri/mori_sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/mwp1sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/mwp2sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/mwp3sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/neuromorphometrics_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025947/ses-2/mri/neuromorphometrics_sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/p0sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/p1sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/p2sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/p3sub-0025947_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025947/ses-2/mri/rp1sub-0025947_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025947/ses-2/mri/rp2sub-0025947_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025947/ses-2/mri/rp3sub-0025947_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025947/ses-2/mri/t_sub-0025947_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025947/ses-2/mri/t_sub-0025947_ses-2_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025947/ses-2/mri/thalamus_sub-0025947_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025947/ses-2/mri/thalamus_sub-0025947_ses-2_run-1_T1w.nii.gz

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