[DATALAD RUNCMD] Compute LMU_3/sub-0025419/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025419/ses-2/anat/sub-0025419_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025419/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025419/ses-2/label/catROI_sub-0025419_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/Q6/MD5E-s61336--90b9ead83f7c99729dbe3a7c3f66525b.mat/MD5E-s61336--90b9ead83f7c99729dbe3a7c3f66525b.mat

LMU_3/sub-0025419/ses-2/label/catROI_sub-0025419_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/j4/MD5E-s189506--d05dc2881741935accdb3ee20485d9f0.xml/MD5E-s189506--d05dc2881741935accdb3ee20485d9f0.xml

LMU_3/sub-0025419/ses-2/label/catROIs_sub-0025419_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/8G/MD5E-s120255--77eaae80c3eb3a7c001ada04c4a6f401.mat/MD5E-s120255--77eaae80c3eb3a7c001ada04c4a6f401.mat

LMU_3/sub-0025419/ses-2/label/catROIs_sub-0025419_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/G5/MD5E-s332124--3459dcfb133bdc9a3d4a24b5a1135c08.xml/MD5E-s332124--3459dcfb133bdc9a3d4a24b5a1135c08.xml

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/xV/MD5E-s152664--92816f6b4aabe991d6513654c36ba17c.nii.gz/MD5E-s152664--92816f6b4aabe991d6513654c36ba17c.nii.gz

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/G5/MD5E-s172496--e96d679134f282265f90fc605fbdb20f.nii.gz/MD5E-s172496--e96d679134f282265f90fc605fbdb20f.nii.gz

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/3W/MD5E-s230662--e99bd2ea61b2e6da3da578dc1e62baca.nii.gz/MD5E-s230662--e99bd2ea61b2e6da3da578dc1e62baca.nii.gz

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025419/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/4M/MD5E-s257432--9220e66fd7d1aabf72fd6fa46f9a7e7b.nii.gz/MD5E-s257432--9220e66fd7d1aabf72fd6fa46f9a7e7b.nii.gz

LMU_3/sub-0025419/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025419/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/7x/MD5E-s22230--9c3ef26c7090188e6df539a63fa243d9.nii.gz/MD5E-s22230--9c3ef26c7090188e6df539a63fa243d9.nii.gz

LMU_3/sub-0025419/ses-2/mri/aal3_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025419/ses-2/mri/aal3_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/VZ/MD5E-s176519--d7174b06941c5aae143c2c5b5f52dc99.nii.gz/MD5E-s176519--d7174b06941c5aae143c2c5b5f52dc99.nii.gz

LMU_3/sub-0025419/ses-2/mri/anatomy3_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025419/ses-2/mri/anatomy3_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pg/80/MD5E-s123545--e93c6c7ec9706579a89213d951aa95c3.nii.gz/MD5E-s123545--e93c6c7ec9706579a89213d951aa95c3.nii.gz

LMU_3/sub-0025419/ses-2/mri/anon_misub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/1m/MD5E-s8123716--ed997b27a3e844bc9e5b6ff37ed61450.nii.gz/MD5E-s8123716--ed997b27a3e844bc9e5b6ff37ed61450.nii.gz

LMU_3/sub-0025419/ses-2/mri/anon_msub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/f1/MD5E-s8533507--eed64afeff2434b62fea95e051cf486e.nii.gz/MD5E-s8533507--eed64afeff2434b62fea95e051cf486e.nii.gz

LMU_3/sub-0025419/ses-2/mri/cat_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/3w/MD5E-s100116--b13b4ff6bdb292c87f297e5dd6185ed5.nii.gz/MD5E-s100116--b13b4ff6bdb292c87f297e5dd6185ed5.nii.gz

LMU_3/sub-0025419/ses-2/mri/cobra_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025419/ses-2/mri/cobra_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/mg/MD5E-s43644--cfe3a909a73f9d411b54b037be40c2c9.nii.gz/MD5E-s43644--cfe3a909a73f9d411b54b037be40c2c9.nii.gz

LMU_3/sub-0025419/ses-2/mri/hammers_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025419/ses-2/mri/hammers_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/j1/MD5E-s138317--88c695b9d413f0b901b9c12cb6ed865b.nii.gz/MD5E-s138317--88c695b9d413f0b901b9c12cb6ed865b.nii.gz

LMU_3/sub-0025419/ses-2/mri/ibsr_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025419/ses-2/mri/ibsr_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/pJ/MD5E-s145828--312b03ac6accb79ca226acee59c0de75.nii.gz/MD5E-s145828--312b03ac6accb79ca226acee59c0de75.nii.gz

LMU_3/sub-0025419/ses-2/mri/it_sub-0025419_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/Qz/MD5E-s284--0bf49d8e2e2d4dbc4227c2d1cf765011.mat/MD5E-s284--0bf49d8e2e2d4dbc4227c2d1cf765011.mat

LMU_3/sub-0025419/ses-2/mri/it_sub-0025419_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/04/MD5E-s283--0e1e60170433623089f3ac9064e4208c.mat/MD5E-s283--0e1e60170433623089f3ac9064e4208c.mat

LMU_3/sub-0025419/ses-2/mri/iy_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/v2/MD5E-s43950369--0688130fa622bd552d49a36dc0a608b2.nii.gz/MD5E-s43950369--0688130fa622bd552d49a36dc0a608b2.nii.gz

LMU_3/sub-0025419/ses-2/mri/julichbrain_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025419/ses-2/mri/julichbrain_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/G8/MD5E-s183101--8c8deb4beb8337db5b77dee8d86b2340.nii.gz/MD5E-s183101--8c8deb4beb8337db5b77dee8d86b2340.nii.gz

LMU_3/sub-0025419/ses-2/mri/lpba40_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025419/ses-2/mri/lpba40_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/Mw/MD5E-s134948--02be2d22ecbc5b98cab67bffa809ecf8.nii.gz/MD5E-s134948--02be2d22ecbc5b98cab67bffa809ecf8.nii.gz

LMU_3/sub-0025419/ses-2/mri/m0wp1sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/FQ/MD5E-s2589469--abfef245cdf5ea7a86f09d4a46d63213.nii.gz/MD5E-s2589469--abfef245cdf5ea7a86f09d4a46d63213.nii.gz

LMU_3/sub-0025419/ses-2/mri/m0wp2sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/zQ/MD5E-s2312448--3c5124989dd1971e289c2dd0742901a1.nii.gz/MD5E-s2312448--3c5124989dd1971e289c2dd0742901a1.nii.gz

LMU_3/sub-0025419/ses-2/mri/m0wp3sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/MX/MD5E-s2688783--11b9feb25d06d75ff12eb28630b95c06.nii.gz/MD5E-s2688783--11b9feb25d06d75ff12eb28630b95c06.nii.gz

LMU_3/sub-0025419/ses-2/mri/mori_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025419/ses-2/mri/mori_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/91/MD5E-s161737--2ec2d851cde954d77be26cb38a9eaf01.nii.gz/MD5E-s161737--2ec2d851cde954d77be26cb38a9eaf01.nii.gz

LMU_3/sub-0025419/ses-2/mri/mwp1sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025419/ses-2/mri/mwp2sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/jz/MD5E-s2318260--9bdf1ca47e08a50c96c795255535101f.nii.gz/MD5E-s2318260--9bdf1ca47e08a50c96c795255535101f.nii.gz

LMU_3/sub-0025419/ses-2/mri/mwp3sub-0025419_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025419/ses-2/mri/neuromorphometrics_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025419/ses-2/mri/neuromorphometrics_sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025419/ses-2/mri/p0sub-0025419_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/vp/MD5E-s601969--9279817ba921708727886ca817eadc86.nii.gz/MD5E-s601969--9279817ba921708727886ca817eadc86.nii.gz

LMU_3/sub-0025419/ses-2/mri/p1sub-0025419_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025419/ses-2/mri/p2sub-0025419_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025419/ses-2/mri/p3sub-0025419_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025419/ses-2/mri/rp1sub-0025419_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025419/ses-2/mri/rp2sub-0025419_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025419/ses-2/mri/rp3sub-0025419_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025419/ses-2/mri/t_sub-0025419_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025419/ses-2/mri/t_sub-0025419_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025419/ses-2/mri/thalamus_sub-0025419_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025419/ses-2/mri/thalamus_sub-0025419_ses-2_run-1_T1w.nii.gz

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