[DATALAD RUNCMD] Compute SWU_1/sub-0027212/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027212/ses-3/anat/sub-0027212_ses-3_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027212/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027212/ses-3/label/catROI_sub-0027212_ses-3_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K4/K8/MD5E-s58662--c56f6cbd8bc43246d96171e903852641.mat/MD5E-s58662--c56f6cbd8bc43246d96171e903852641.mat

SWU_1/sub-0027212/ses-3/label/catROI_sub-0027212_ses-3_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vX/ZF/MD5E-s188835--b048b0562844f6c2dc925d7286d7d365.xml/MD5E-s188835--b048b0562844f6c2dc925d7286d7d365.xml

SWU_1/sub-0027212/ses-3/label/catROI_sub-0027212_ses-3_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/vw/MD5E-s61278--05b5ca1932855780827929b17beb1ec3.mat/MD5E-s61278--05b5ca1932855780827929b17beb1ec3.mat

SWU_1/sub-0027212/ses-3/label/catROI_sub-0027212_ses-3_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/kX/MD5E-s188849--e41dcc017aa06d1575fa4881a9591561.xml/MD5E-s188849--e41dcc017aa06d1575fa4881a9591561.xml

SWU_1/sub-0027212/ses-3/label/catROIs_sub-0027212_ses-3_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jk/Mk/MD5E-s120151--8e1c2eb72d3392416c58b6b7b57b7526.mat/MD5E-s120151--8e1c2eb72d3392416c58b6b7b57b7526.mat

SWU_1/sub-0027212/ses-3/label/catROIs_sub-0027212_ses-3_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VG/Zw/MD5E-s332074--e7124417cf8dc06aaece362220e1b0fb.xml/MD5E-s332074--e7124417cf8dc06aaece362220e1b0fb.xml

SWU_1/sub-0027212/ses-3/label/catROIs_sub-0027212_ses-3_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/8J/MD5E-s120082--51633fbb675b718e1df54c7d06971c7b.mat/MD5E-s120082--51633fbb675b718e1df54c7d06971c7b.mat

SWU_1/sub-0027212/ses-3/label/catROIs_sub-0027212_ses-3_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/Xm/MD5E-s332101--c47b44c0c8786b515636da6a18f9a454.xml/MD5E-s332101--c47b44c0c8786b515636da6a18f9a454.xml

SWU_1/sub-0027212/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/27/x4/MD5E-s174709--1f9f3ad4a1f518c8175d9348847a41c1.nii.gz/MD5E-s174709--1f9f3ad4a1f518c8175d9348847a41c1.nii.gz

SWU_1/sub-0027212/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027212/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/31/Fz/MD5E-s193817--38797574c274d55d61d332f62a3fe425.nii.gz/MD5E-s193817--38797574c274d55d61d332f62a3fe425.nii.gz

SWU_1/sub-0027212/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/3M/MD5E-s194457--f981fcdb1ad73b04649498de1f1d0160.nii.gz/MD5E-s194457--f981fcdb1ad73b04649498de1f1d0160.nii.gz

SWU_1/sub-0027212/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/43/qW/MD5E-s261728--ddc802eebbb2e51c3009207886b77a82.nii.gz/MD5E-s261728--ddc802eebbb2e51c3009207886b77a82.nii.gz

SWU_1/sub-0027212/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027212/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027212/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w6/Xp/MD5E-s25262--ece07236241610c24747f8ce698f03f6.nii.gz/MD5E-s25262--ece07236241610c24747f8ce698f03f6.nii.gz

SWU_1/sub-0027212/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/WM/MD5E-s25207--42eb69396dd2ccec0b7a55947133b3da.nii.gz/MD5E-s25207--42eb69396dd2ccec0b7a55947133b3da.nii.gz

SWU_1/sub-0027212/ses-3/mri/aal3_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/aal3_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/qg/MD5E-s194835--7ece5329eff5b8bbc61ae010546aedf4.nii.gz/MD5E-s194835--7ece5329eff5b8bbc61ae010546aedf4.nii.gz

SWU_1/sub-0027212/ses-3/mri/anatomy3_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/anatomy3_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/k9/MD5E-s142215--9ef0c00ea4b4faa7bc99370638683f00.nii.gz/MD5E-s142215--9ef0c00ea4b4faa7bc99370638683f00.nii.gz

SWU_1/sub-0027212/ses-3/mri/anon_misub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/anon_misub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027212/ses-3/mri/anon_msub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/anon_msub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/cat_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/cat_sub-0027212_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027212/ses-3/mri/cobra_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/cobra_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/hammers_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/hammers_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/ibsr_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/ibsr_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/it_sub-0027212_ses-3_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fJ/gP/MD5E-s283--864af1ed8aa0dbf2c5070dd71cc2e5bd.mat/MD5E-s283--864af1ed8aa0dbf2c5070dd71cc2e5bd.mat

SWU_1/sub-0027212/ses-3/mri/it_sub-0027212_ses-3_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/it_sub-0027212_ses-3_run-2_T1w_affine_reorient.mat

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SWU_1/sub-0027212/ses-3/mri/it_sub-0027212_ses-3_run-2_T1w_rigid_reorient.mat

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SWU_1/sub-0027212/ses-3/mri/iy_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/iy_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/julichbrain_sub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/julichbrain_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/lpba40_sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/lpba40_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/m0wp1sub-0027212_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027212/ses-3/mri/m0wp1sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/m0wp2sub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/m0wp2sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/m0wp3sub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/m0wp3sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/mori_sub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/mori_sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/mwp1sub-0027212_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/mwp1sub-0027212_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027212/ses-3/mri/mwp2sub-0027212_ses-3_run-1_T1w.nii.gz

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