[DATALAD RUNCMD] Compute BNU_2/sub-0025959/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025959/ses-1/anat/sub-0025959_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025959/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025959/ses-1/label/catROI_sub-0025959_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/9f/MD5E-s57868--70202dd65060ad26964517be690e3974.mat/MD5E-s57868--70202dd65060ad26964517be690e3974.mat

BNU_2/sub-0025959/ses-1/label/catROI_sub-0025959_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/PX/MD5E-s188819--ef0f34f2269cb1478401d2ddfb68e580.xml/MD5E-s188819--ef0f34f2269cb1478401d2ddfb68e580.xml

BNU_2/sub-0025959/ses-1/label/catROIs_sub-0025959_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P6/wz/MD5E-s120039--29c356efd90b1b844138630b8660b5a3.mat/MD5E-s120039--29c356efd90b1b844138630b8660b5a3.mat

BNU_2/sub-0025959/ses-1/label/catROIs_sub-0025959_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/P3/MD5E-s332150--772ec621f7a8e72630d451e8fcd9f505.xml/MD5E-s332150--772ec621f7a8e72630d451e8fcd9f505.xml

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/Pp/MD5E-s150286--a8e2d4f9fbf33a60c0f095396c68c580.nii.gz/MD5E-s150286--a8e2d4f9fbf33a60c0f095396c68c580.nii.gz

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/zJ/MD5E-s166221--06e0ef874af6e93b6ec76e3e036b4087.nii.gz/MD5E-s166221--06e0ef874af6e93b6ec76e3e036b4087.nii.gz

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/5Q/MD5E-s223073--f26c2ce6fb26e6cfd65752dc6b803425.nii.gz/MD5E-s223073--f26c2ce6fb26e6cfd65752dc6b803425.nii.gz

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025959/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/0W/MD5E-s246606--f2395e7833734d75f75bf252ae2e9624.nii.gz/MD5E-s246606--f2395e7833734d75f75bf252ae2e9624.nii.gz

BNU_2/sub-0025959/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025959/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/w1/MD5E-s20508--a2893845827b5eef85655dc5279cf8c0.nii.gz/MD5E-s20508--a2893845827b5eef85655dc5279cf8c0.nii.gz

BNU_2/sub-0025959/ses-1/mri/aal3_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025959/ses-1/mri/aal3_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/f7/MD5E-s169830--e576bb2621446bfa8843bfb31c2de082.nii.gz/MD5E-s169830--e576bb2621446bfa8843bfb31c2de082.nii.gz

BNU_2/sub-0025959/ses-1/mri/anatomy3_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025959/ses-1/mri/anatomy3_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/9M/MD5E-s118621--91c66e1ab92d428b6af644f87c92d224.nii.gz/MD5E-s118621--91c66e1ab92d428b6af644f87c92d224.nii.gz

BNU_2/sub-0025959/ses-1/mri/anon_misub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/f9/MD5E-s4329830--5772a30f70cfa2e730a06787b0fce601.nii.gz/MD5E-s4329830--5772a30f70cfa2e730a06787b0fce601.nii.gz

BNU_2/sub-0025959/ses-1/mri/anon_msub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/48/MD5E-s9877550--a2da94206b8385704da20bf2d47ca69a.nii.gz/MD5E-s9877550--a2da94206b8385704da20bf2d47ca69a.nii.gz

BNU_2/sub-0025959/ses-1/mri/cat_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/wG/MD5E-s91604--732c34c0fc298aa3c7548ee50c91b3d2.nii.gz/MD5E-s91604--732c34c0fc298aa3c7548ee50c91b3d2.nii.gz

BNU_2/sub-0025959/ses-1/mri/cobra_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025959/ses-1/mri/cobra_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/xV/MD5E-s42403--f8400baa42fecff006d9aa6e07edb06e.nii.gz/MD5E-s42403--f8400baa42fecff006d9aa6e07edb06e.nii.gz

BNU_2/sub-0025959/ses-1/mri/hammers_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025959/ses-1/mri/hammers_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/25/MD5E-s134373--aa50c2b7c1d914fb77daf9fb244d5a9f.nii.gz/MD5E-s134373--aa50c2b7c1d914fb77daf9fb244d5a9f.nii.gz

BNU_2/sub-0025959/ses-1/mri/ibsr_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025959/ses-1/mri/ibsr_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/Vp/MD5E-s140306--ff3922c0dbe6f60c56324ab5bb25ed0f.nii.gz/MD5E-s140306--ff3922c0dbe6f60c56324ab5bb25ed0f.nii.gz

BNU_2/sub-0025959/ses-1/mri/it_sub-0025959_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/vv/MD5E-s283--4143c562be325e5ebb3ff834e8e3f4cf.mat/MD5E-s283--4143c562be325e5ebb3ff834e8e3f4cf.mat

BNU_2/sub-0025959/ses-1/mri/it_sub-0025959_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/mj/MD5E-s282--647de23b0e2c95794ac374d17fdb07ad.mat/MD5E-s282--647de23b0e2c95794ac374d17fdb07ad.mat

BNU_2/sub-0025959/ses-1/mri/iy_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V2/9g/MD5E-s36687514--1338c550faef7b58236d0a29f99ed610.nii.gz/MD5E-s36687514--1338c550faef7b58236d0a29f99ed610.nii.gz

BNU_2/sub-0025959/ses-1/mri/julichbrain_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025959/ses-1/mri/julichbrain_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/mj/MD5E-s178094--ebb8b67648babf307197ea0c05de23ce.nii.gz/MD5E-s178094--ebb8b67648babf307197ea0c05de23ce.nii.gz

BNU_2/sub-0025959/ses-1/mri/lpba40_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025959/ses-1/mri/lpba40_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/89/MD5E-s130916--a823600a8a6dc0f678224195c62eedcc.nii.gz/MD5E-s130916--a823600a8a6dc0f678224195c62eedcc.nii.gz

BNU_2/sub-0025959/ses-1/mri/m0wp1sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/qz/MD5E-s2593338--58bde812089b3610e6f4cac1908d9b3b.nii.gz/MD5E-s2593338--58bde812089b3610e6f4cac1908d9b3b.nii.gz

BNU_2/sub-0025959/ses-1/mri/m0wp2sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/2g/MD5E-s2289571--9c210afab3b3551626a57d153211f5a9.nii.gz/MD5E-s2289571--9c210afab3b3551626a57d153211f5a9.nii.gz

BNU_2/sub-0025959/ses-1/mri/m0wp3sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/z7/MD5E-s2486789--af5107b16dd6b0b906a5526f294b4461.nii.gz/MD5E-s2486789--af5107b16dd6b0b906a5526f294b4461.nii.gz

BNU_2/sub-0025959/ses-1/mri/mori_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025959/ses-1/mri/mori_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/1M/MD5E-s156947--3653263c4a570ef911d3e634b01dcfe6.nii.gz/MD5E-s156947--3653263c4a570ef911d3e634b01dcfe6.nii.gz

BNU_2/sub-0025959/ses-1/mri/mwp1sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/pV/MD5E-s2593593--620104c121daf611f44fbed4735bb770.nii.gz/MD5E-s2593593--620104c121daf611f44fbed4735bb770.nii.gz

BNU_2/sub-0025959/ses-1/mri/mwp2sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/Wz/MD5E-s2283321--1a24bf468ffa939bdd52fa0bdc0d32dc.nii.gz/MD5E-s2283321--1a24bf468ffa939bdd52fa0bdc0d32dc.nii.gz

BNU_2/sub-0025959/ses-1/mri/mwp3sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/1W/MD5E-s2483918--6e212fd0adbaece5d1d426114e007798.nii.gz/MD5E-s2483918--6e212fd0adbaece5d1d426114e007798.nii.gz

BNU_2/sub-0025959/ses-1/mri/neuromorphometrics_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025959/ses-1/mri/neuromorphometrics_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/5j/MD5E-s182824--e2c63af4a7af344b0b73377a10b282f7.nii.gz/MD5E-s182824--e2c63af4a7af344b0b73377a10b282f7.nii.gz

BNU_2/sub-0025959/ses-1/mri/p0sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/zg/MD5E-s783511--2f01f5a218d0670e37f8cf7d115e2ff7.nii.gz/MD5E-s783511--2f01f5a218d0670e37f8cf7d115e2ff7.nii.gz

BNU_2/sub-0025959/ses-1/mri/p1sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/ZQ/MD5E-s798013--443bd3362d376f4d90b6df3b4923ec39.nii.gz/MD5E-s798013--443bd3362d376f4d90b6df3b4923ec39.nii.gz

BNU_2/sub-0025959/ses-1/mri/p2sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/mk/MD5E-s533066--d8ccdb9bc009434be614494a76e7d42d.nii.gz/MD5E-s533066--d8ccdb9bc009434be614494a76e7d42d.nii.gz

BNU_2/sub-0025959/ses-1/mri/p3sub-0025959_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025959/ses-1/mri/rp1sub-0025959_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/kJ/MD5E-s447590--aecc56815c01e4a1730cd943fb5a2837.nii.gz/MD5E-s447590--aecc56815c01e4a1730cd943fb5a2837.nii.gz

BNU_2/sub-0025959/ses-1/mri/rp2sub-0025959_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025959/ses-1/mri/rp3sub-0025959_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025959/ses-1/mri/t_sub-0025959_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025959/ses-1/mri/t_sub-0025959_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/7V/MD5E-s282--bae20c007bb51e26599f696554cd85f3.mat/MD5E-s282--bae20c007bb51e26599f696554cd85f3.mat

BNU_2/sub-0025959/ses-1/mri/thalamus_sub-0025959_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025959/ses-1/mri/thalamus_sub-0025959_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/8K/MD5E-s12716--53e348e582d031cc2af0abf5eb41197e.nii.gz/MD5E-s12716--53e348e582d031cc2af0abf5eb41197e.nii.gz

BNU_2/sub-0025959/ses-1/mri/wj_sub-0025959_ses-1_run-1_T1w.nii.gz

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