[DATALAD RUNCMD] Compute IACAS/sub-0025466/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025466/ses-3/anat/sub-0025466_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025466/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025466/ses-3/label/catROI_sub-0025466_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/Xw/MD5E-s61279--6350abf85219f85c6cd334b6b094a8d9.mat/MD5E-s61279--6350abf85219f85c6cd334b6b094a8d9.mat

IACAS/sub-0025466/ses-3/label/catROI_sub-0025466_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/gF/MD5E-s188609--ae2999cc09117f4a97ce881862f3f28d.xml/MD5E-s188609--ae2999cc09117f4a97ce881862f3f28d.xml

IACAS/sub-0025466/ses-3/label/catROIs_sub-0025466_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/4V/MD5E-s120228--cf039b4e0788f04f67e5530dfe54831a.mat/MD5E-s120228--cf039b4e0788f04f67e5530dfe54831a.mat

IACAS/sub-0025466/ses-3/label/catROIs_sub-0025466_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/MZ/MD5E-s332106--f07b659bd0fcd067471280555168ed2f.xml/MD5E-s332106--f07b659bd0fcd067471280555168ed2f.xml

IACAS/sub-0025466/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025466/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025466/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/fj/MD5E-s157516--758ff7d96d50abe06c1466d092df1ef0.nii.gz/MD5E-s157516--758ff7d96d50abe06c1466d092df1ef0.nii.gz

IACAS/sub-0025466/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025466/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/Xf/MD5E-s208137--73581cce5d16b27a060bd3be5b9f6dc4.nii.gz/MD5E-s208137--73581cce5d16b27a060bd3be5b9f6dc4.nii.gz

IACAS/sub-0025466/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025466/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/g0/MD5E-s233197--bd652bc5fbc7b76a1a972c19b2c27578.nii.gz/MD5E-s233197--bd652bc5fbc7b76a1a972c19b2c27578.nii.gz

IACAS/sub-0025466/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/Wf/MD5E-s17414--d248d440169df5997c6d3d5b94719f44.nii.gz/MD5E-s17414--d248d440169df5997c6d3d5b94719f44.nii.gz

IACAS/sub-0025466/ses-3/mri/aal3_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/aal3_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/anatomy3_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/anatomy3_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/fw/MD5E-s112583--46ebadb6ae4133f9fb8a16db235b3a56.nii.gz/MD5E-s112583--46ebadb6ae4133f9fb8a16db235b3a56.nii.gz

IACAS/sub-0025466/ses-3/mri/anon_misub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/anon_msub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/0Z/MD5E-s6816570--5b2080403fcf59f98f31e02edbffea93.nii.gz/MD5E-s6816570--5b2080403fcf59f98f31e02edbffea93.nii.gz

IACAS/sub-0025466/ses-3/mri/cat_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/cobra_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025466/ses-3/mri/cobra_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/hammers_sub-0025466_ses-3_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025466/ses-3/mri/hammers_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/ibsr_sub-0025466_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/ibsr_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/it_sub-0025466_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/17/MD5E-s283--023de6807b63451e51c49b48164520ae.mat/MD5E-s283--023de6807b63451e51c49b48164520ae.mat

IACAS/sub-0025466/ses-3/mri/it_sub-0025466_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/QX/MD5E-s284--4d963f92722eecbdc01492bb3a054f06.mat/MD5E-s284--4d963f92722eecbdc01492bb3a054f06.mat

IACAS/sub-0025466/ses-3/mri/iy_sub-0025466_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025466/ses-3/mri/julichbrain_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/julichbrain_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/lpba40_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/lpba40_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/m0wp1sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/m0wp2sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/m0wp3sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/mori_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/mori_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/mwp1sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/mwp2sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/mwp3sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/neuromorphometrics_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/neuromorphometrics_sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/p0sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/p1sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/p2sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/p3sub-0025466_ses-3_run-1_T1w.nii.gz

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IACAS/sub-0025466/ses-3/mri/rp1sub-0025466_ses-3_run-1_T1w_affine.nii.gz

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IACAS/sub-0025466/ses-3/mri/rp2sub-0025466_ses-3_run-1_T1w_affine.nii.gz

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IACAS/sub-0025466/ses-3/mri/rp3sub-0025466_ses-3_run-1_T1w_affine.nii.gz

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IACAS/sub-0025466/ses-3/mri/t_sub-0025466_ses-3_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025466/ses-3/mri/t_sub-0025466_ses-3_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025466/ses-3/mri/thalamus_sub-0025466_ses-3_run-1_T1w.csv

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IACAS/sub-0025466/ses-3/mri/thalamus_sub-0025466_ses-3_run-1_T1w.nii.gz

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