[DATALAD RUNCMD] Compute BNU_2/sub-0025958/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025958/ses-1/anat/sub-0025958_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025958/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025958/ses-1/label/catROI_sub-0025958_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/zK/MD5E-s58029--f7c62532e126c9291bff7dc95f44a030.mat/MD5E-s58029--f7c62532e126c9291bff7dc95f44a030.mat

BNU_2/sub-0025958/ses-1/label/catROI_sub-0025958_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/W5/MD5E-s188481--b06ff55e06f7a64cf20b1faa1faf81d6.xml/MD5E-s188481--b06ff55e06f7a64cf20b1faa1faf81d6.xml

BNU_2/sub-0025958/ses-1/label/catROIs_sub-0025958_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/8W/MD5E-s120091--bedded1fc50f05cb2dc91431b1ecaa78.mat/MD5E-s120091--bedded1fc50f05cb2dc91431b1ecaa78.mat

BNU_2/sub-0025958/ses-1/label/catROIs_sub-0025958_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/28/MD5E-s332110--c23b3af8a3d617c789f13d2faba15b23.xml/MD5E-s332110--c23b3af8a3d617c789f13d2faba15b23.xml

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/8P/MD5E-s149189--37f7c7388b4b4e5c2a38f164346eeb60.nii.gz/MD5E-s149189--37f7c7388b4b4e5c2a38f164346eeb60.nii.gz

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/xX/MD5E-s166040--a9924e991ec4dd9dae35f9940fc13cf1.nii.gz/MD5E-s166040--a9924e991ec4dd9dae35f9940fc13cf1.nii.gz

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/x4/MD5E-s222071--ae9ed7d56f83cb8ef728cbb0cb55cf08.nii.gz/MD5E-s222071--ae9ed7d56f83cb8ef728cbb0cb55cf08.nii.gz

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025958/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/Fx/MD5E-s246370--3cdb7d5a9d744bb7e3bbc8f22239cdb1.nii.gz/MD5E-s246370--3cdb7d5a9d744bb7e3bbc8f22239cdb1.nii.gz

BNU_2/sub-0025958/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025958/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/W5/MD5E-s20450--7dab0c07ca1a57fc9c4a95e5ca80c67c.nii.gz/MD5E-s20450--7dab0c07ca1a57fc9c4a95e5ca80c67c.nii.gz

BNU_2/sub-0025958/ses-1/mri/aal3_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025958/ses-1/mri/aal3_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/8z/MD5E-s168157--aa7403330bb69199a07c3972abd6bf27.nii.gz/MD5E-s168157--aa7403330bb69199a07c3972abd6bf27.nii.gz

BNU_2/sub-0025958/ses-1/mri/anatomy3_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025958/ses-1/mri/anatomy3_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/F5/MD5E-s119596--50acefae23e15b76ef717e9014b4bb68.nii.gz/MD5E-s119596--50acefae23e15b76ef717e9014b4bb68.nii.gz

BNU_2/sub-0025958/ses-1/mri/anon_misub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/9f/MD5E-s3902195--b261dfcc056114d41be6645496600d0b.nii.gz/MD5E-s3902195--b261dfcc056114d41be6645496600d0b.nii.gz

BNU_2/sub-0025958/ses-1/mri/anon_msub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/GQ/MD5E-s6810286--c250811cac5364150d5fd10738273dce.nii.gz/MD5E-s6810286--c250811cac5364150d5fd10738273dce.nii.gz

BNU_2/sub-0025958/ses-1/mri/cat_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/PQ/MD5E-s87933--34954f2f8f0b6bb0d7cdefda19971ac7.nii.gz/MD5E-s87933--34954f2f8f0b6bb0d7cdefda19971ac7.nii.gz

BNU_2/sub-0025958/ses-1/mri/cobra_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025958/ses-1/mri/cobra_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/1V/MD5E-s42136--87c7066f5b43e69e6da72f952e20e1ad.nii.gz/MD5E-s42136--87c7066f5b43e69e6da72f952e20e1ad.nii.gz

BNU_2/sub-0025958/ses-1/mri/hammers_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025958/ses-1/mri/hammers_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/vW/MD5E-s132760--6a8d483db435d886bcf8b7f54c9decea.nii.gz/MD5E-s132760--6a8d483db435d886bcf8b7f54c9decea.nii.gz

BNU_2/sub-0025958/ses-1/mri/ibsr_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025958/ses-1/mri/ibsr_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/75/MD5E-s138295--cfb8e51630a860e61130d751a7c62f18.nii.gz/MD5E-s138295--cfb8e51630a860e61130d751a7c62f18.nii.gz

BNU_2/sub-0025958/ses-1/mri/it_sub-0025958_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/5w/MD5E-s283--0234727c574d3b050468c2d1920df8d5.mat/MD5E-s283--0234727c574d3b050468c2d1920df8d5.mat

BNU_2/sub-0025958/ses-1/mri/it_sub-0025958_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/2K/MD5E-s283--65791ac601aeb83074587700efa746c5.mat/MD5E-s283--65791ac601aeb83074587700efa746c5.mat

BNU_2/sub-0025958/ses-1/mri/iy_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/j7/MD5E-s36142032--397a4d5b7a1f65144fc098477ff2b5fd.nii.gz/MD5E-s36142032--397a4d5b7a1f65144fc098477ff2b5fd.nii.gz

BNU_2/sub-0025958/ses-1/mri/julichbrain_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025958/ses-1/mri/julichbrain_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/qj/MD5E-s177863--4def9b4418b01fd1ba1625c650869389.nii.gz/MD5E-s177863--4def9b4418b01fd1ba1625c650869389.nii.gz

BNU_2/sub-0025958/ses-1/mri/lpba40_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025958/ses-1/mri/lpba40_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/GG/MD5E-s130157--b5ce7c28383e923007c08eca79b10b60.nii.gz/MD5E-s130157--b5ce7c28383e923007c08eca79b10b60.nii.gz

BNU_2/sub-0025958/ses-1/mri/m0wp1sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/08/MD5E-s2587978--f9e654434ae99ea8cf527ccc0558bff7.nii.gz/MD5E-s2587978--f9e654434ae99ea8cf527ccc0558bff7.nii.gz

BNU_2/sub-0025958/ses-1/mri/m0wp2sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/f0/MD5E-s2281687--af4f4a4f45a00124640f21b6fe5bad87.nii.gz/MD5E-s2281687--af4f4a4f45a00124640f21b6fe5bad87.nii.gz

BNU_2/sub-0025958/ses-1/mri/m0wp3sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/wW/MD5E-s2387738--8c1d7e63758b720542318d12a21386c1.nii.gz/MD5E-s2387738--8c1d7e63758b720542318d12a21386c1.nii.gz

BNU_2/sub-0025958/ses-1/mri/mori_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025958/ses-1/mri/mori_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/V9/MD5E-s155637--94c6b75693f60afdc0eab282b13b4328.nii.gz/MD5E-s155637--94c6b75693f60afdc0eab282b13b4328.nii.gz

BNU_2/sub-0025958/ses-1/mri/mwp1sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/W7/MD5E-s2589299--5c34f6dc1c19776ca7185b301ea7adfa.nii.gz/MD5E-s2589299--5c34f6dc1c19776ca7185b301ea7adfa.nii.gz

BNU_2/sub-0025958/ses-1/mri/mwp2sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/8F/MD5E-s2274668--39de27b05ddf2a11fbbb69b29a584a16.nii.gz/MD5E-s2274668--39de27b05ddf2a11fbbb69b29a584a16.nii.gz

BNU_2/sub-0025958/ses-1/mri/mwp3sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/J1/MD5E-s2384053--0d9a615aba40c3ed9326bd331bd60967.nii.gz/MD5E-s2384053--0d9a615aba40c3ed9326bd331bd60967.nii.gz

BNU_2/sub-0025958/ses-1/mri/neuromorphometrics_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025958/ses-1/mri/neuromorphometrics_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/GZ/MD5E-s180315--e2c4eccdb67b52ca05073dea127d007e.nii.gz/MD5E-s180315--e2c4eccdb67b52ca05073dea127d007e.nii.gz

BNU_2/sub-0025958/ses-1/mri/p0sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/0X/MD5E-s744742--a67a770b52e94a96c7dadbc7e3e46773.nii.gz/MD5E-s744742--a67a770b52e94a96c7dadbc7e3e46773.nii.gz

BNU_2/sub-0025958/ses-1/mri/p1sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/67/MD5E-s776768--a7b9e13c4f6967b5d528f2924cb89dee.nii.gz/MD5E-s776768--a7b9e13c4f6967b5d528f2924cb89dee.nii.gz

BNU_2/sub-0025958/ses-1/mri/p2sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/xq/MD5E-s532089--81c0b2c8351a1701bdcf19323db77b99.nii.gz/MD5E-s532089--81c0b2c8351a1701bdcf19323db77b99.nii.gz

BNU_2/sub-0025958/ses-1/mri/p3sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/XJ/MD5E-s430015--3b70678feb1b8958843d2b44bdbde446.nii.gz/MD5E-s430015--3b70678feb1b8958843d2b44bdbde446.nii.gz

BNU_2/sub-0025958/ses-1/mri/rp1sub-0025958_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/mM/MD5E-s446511--6db22f79fe3cad577eec2e100dc19cf6.nii.gz/MD5E-s446511--6db22f79fe3cad577eec2e100dc19cf6.nii.gz

BNU_2/sub-0025958/ses-1/mri/rp2sub-0025958_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025958/ses-1/mri/rp3sub-0025958_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/F0/MD5E-s249221--dfdd8c8bc02f7be477781c4f84123e29.nii.gz/MD5E-s249221--dfdd8c8bc02f7be477781c4f84123e29.nii.gz

BNU_2/sub-0025958/ses-1/mri/t_sub-0025958_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/6F/MD5E-s285--fd56c9225243a1d9d843432063a79efa.mat/MD5E-s285--fd56c9225243a1d9d843432063a79efa.mat

BNU_2/sub-0025958/ses-1/mri/t_sub-0025958_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/zJ/MD5E-s284--1473f6eefb05c1335ccf84db5c5b2b7e.mat/MD5E-s284--1473f6eefb05c1335ccf84db5c5b2b7e.mat

BNU_2/sub-0025958/ses-1/mri/thalamus_sub-0025958_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025958/ses-1/mri/thalamus_sub-0025958_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/PX/MD5E-s12811--5ee125047f1e78a8f24e9b29a9a976fd.nii.gz/MD5E-s12811--5ee125047f1e78a8f24e9b29a9a976fd.nii.gz

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