[DATALAD RUNCMD] Compute LMU_3/sub-0025411/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025411/ses-1/anat/sub-0025411_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025411/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025411/ses-1/label/catROI_sub-0025411_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/8X/MD5E-s58161--940df2ce568f429ed30388112dd04972.mat/MD5E-s58161--940df2ce568f429ed30388112dd04972.mat

LMU_3/sub-0025411/ses-1/label/catROI_sub-0025411_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/KP/MD5E-s189329--5f0266f49781ba64f318047bd2aac456.xml/MD5E-s189329--5f0266f49781ba64f318047bd2aac456.xml

LMU_3/sub-0025411/ses-1/label/catROIs_sub-0025411_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/Z4/MD5E-s120252--dd62c125dbebc62d43942b858597128d.mat/MD5E-s120252--dd62c125dbebc62d43942b858597128d.mat

LMU_3/sub-0025411/ses-1/label/catROIs_sub-0025411_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/vz/MD5E-s332181--a8e52c8100987983b4ceb1389090a47e.xml/MD5E-s332181--a8e52c8100987983b4ceb1389090a47e.xml

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/G4/MD5E-s167119--e29466f2aa3892514dbb8ea12edb762a.nii.gz/MD5E-s167119--e29466f2aa3892514dbb8ea12edb762a.nii.gz

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/FK/MD5E-s185785--7dc9ab9e0007fc27fce22ba4848171bb.nii.gz/MD5E-s185785--7dc9ab9e0007fc27fce22ba4848171bb.nii.gz

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/Qk/MD5E-s253385--196737c780514b0afac95b604f359a77.nii.gz/MD5E-s253385--196737c780514b0afac95b604f359a77.nii.gz

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025411/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/xq/MD5E-s279951--42aa2a027217b06321b9ffde60337696.nii.gz/MD5E-s279951--42aa2a027217b06321b9ffde60337696.nii.gz

LMU_3/sub-0025411/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025411/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/Pf/MD5E-s22645--f9d7964596b9248457ddd15dc71da360.nii.gz/MD5E-s22645--f9d7964596b9248457ddd15dc71da360.nii.gz

LMU_3/sub-0025411/ses-1/mri/aal3_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025411/ses-1/mri/aal3_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/34/MD5E-s189514--88d604788dcd5ae3431b8cc6ced6c217.nii.gz/MD5E-s189514--88d604788dcd5ae3431b8cc6ced6c217.nii.gz

LMU_3/sub-0025411/ses-1/mri/anatomy3_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025411/ses-1/mri/anatomy3_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/ff/MD5E-s134584--7a40cfd3f1ea68eb152a48b0bc6cf2f3.nii.gz/MD5E-s134584--7a40cfd3f1ea68eb152a48b0bc6cf2f3.nii.gz

LMU_3/sub-0025411/ses-1/mri/anon_misub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/Kw/MD5E-s8324534--a7a69e338bb65d35394c6e89ef60d1ac.nii.gz/MD5E-s8324534--a7a69e338bb65d35394c6e89ef60d1ac.nii.gz

LMU_3/sub-0025411/ses-1/mri/anon_msub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/w3/MD5E-s8809366--dd0ce8d1a36ef02b61f202d5781afea4.nii.gz/MD5E-s8809366--dd0ce8d1a36ef02b61f202d5781afea4.nii.gz

LMU_3/sub-0025411/ses-1/mri/cat_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/4j/MD5E-s115103--3453b0918d9174148523d1bf1cd1468d.nii.gz/MD5E-s115103--3453b0918d9174148523d1bf1cd1468d.nii.gz

LMU_3/sub-0025411/ses-1/mri/cobra_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025411/ses-1/mri/cobra_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/m1/MD5E-s45254--4104f74475d01be95886c3a1b82beb16.nii.gz/MD5E-s45254--4104f74475d01be95886c3a1b82beb16.nii.gz

LMU_3/sub-0025411/ses-1/mri/hammers_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025411/ses-1/mri/hammers_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/wk/MD5E-s148226--586bfe8d6aba81eb15f5381b2cd1e317.nii.gz/MD5E-s148226--586bfe8d6aba81eb15f5381b2cd1e317.nii.gz

LMU_3/sub-0025411/ses-1/mri/ibsr_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025411/ses-1/mri/ibsr_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/X9/MD5E-s155018--09687425cc4afb1dfc08fa038cc919df.nii.gz/MD5E-s155018--09687425cc4afb1dfc08fa038cc919df.nii.gz

LMU_3/sub-0025411/ses-1/mri/it_sub-0025411_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/Vv/MD5E-s281--66fdef31b6a959c6c0734de0b1af41b5.mat/MD5E-s281--66fdef31b6a959c6c0734de0b1af41b5.mat

LMU_3/sub-0025411/ses-1/mri/it_sub-0025411_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/66/MD5E-s282--7ef672173d95085be3f7e56924c42928.mat/MD5E-s282--7ef672173d95085be3f7e56924c42928.mat

LMU_3/sub-0025411/ses-1/mri/iy_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/wF/MD5E-s46441759--1bbb874b2a27e8cadb90ea6e1ab12036.nii.gz/MD5E-s46441759--1bbb874b2a27e8cadb90ea6e1ab12036.nii.gz

LMU_3/sub-0025411/ses-1/mri/julichbrain_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025411/ses-1/mri/julichbrain_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/m6/MD5E-s202093--1cf1c68dc0b8e9df0757b728585a7429.nii.gz/MD5E-s202093--1cf1c68dc0b8e9df0757b728585a7429.nii.gz

LMU_3/sub-0025411/ses-1/mri/lpba40_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025411/ses-1/mri/lpba40_sub-0025411_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/wQ/k0/MD5E-s144861--71839de0fd2a0ce5a6f882cc7e3ecc86.nii.gz/MD5E-s144861--71839de0fd2a0ce5a6f882cc7e3ecc86.nii.gz

LMU_3/sub-0025411/ses-1/mri/m0wp1sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/p3/MD5E-s2598805--dbbf3c3586a14fde5c9bc37fc3994eb3.nii.gz/MD5E-s2598805--dbbf3c3586a14fde5c9bc37fc3994eb3.nii.gz

LMU_3/sub-0025411/ses-1/mri/m0wp2sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/ZV/MD5E-s2341328--49304597b6f200011a7b85415d09e976.nii.gz/MD5E-s2341328--49304597b6f200011a7b85415d09e976.nii.gz

LMU_3/sub-0025411/ses-1/mri/m0wp3sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/Wm/MD5E-s2711472--f6c7692fcc55acd6aa8cc28b4d0b3111.nii.gz/MD5E-s2711472--f6c7692fcc55acd6aa8cc28b4d0b3111.nii.gz

LMU_3/sub-0025411/ses-1/mri/mori_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025411/ses-1/mri/mori_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/z7/MD5E-s175647--326565bf5a96648b9e2dd9143e9295e4.nii.gz/MD5E-s175647--326565bf5a96648b9e2dd9143e9295e4.nii.gz

LMU_3/sub-0025411/ses-1/mri/mwp1sub-0025411_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025411/ses-1/mri/mwp2sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/50/MD5E-s2339844--f80ab82b1b54cc0a3f891d0f27d79d79.nii.gz/MD5E-s2339844--f80ab82b1b54cc0a3f891d0f27d79d79.nii.gz

LMU_3/sub-0025411/ses-1/mri/mwp3sub-0025411_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025411/ses-1/mri/neuromorphometrics_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025411/ses-1/mri/neuromorphometrics_sub-0025411_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025411/ses-1/mri/p0sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/f3/MD5E-s684903--7226fffa045b99a747e1dd04d1987a56.nii.gz/MD5E-s684903--7226fffa045b99a747e1dd04d1987a56.nii.gz

LMU_3/sub-0025411/ses-1/mri/p1sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025411/ses-1/mri/p2sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/GP/MD5E-s449787--0d974a588889f6557bbb3a43d9aa0a84.nii.gz/MD5E-s449787--0d974a588889f6557bbb3a43d9aa0a84.nii.gz

LMU_3/sub-0025411/ses-1/mri/p3sub-0025411_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025411/ses-1/mri/rp1sub-0025411_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025411/ses-1/mri/rp2sub-0025411_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025411/ses-1/mri/rp3sub-0025411_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025411/ses-1/mri/t_sub-0025411_ses-1_run-1_T1w_affine_reorient.mat

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LMU_3/sub-0025411/ses-1/mri/t_sub-0025411_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025411/ses-1/mri/thalamus_sub-0025411_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025411/ses-1/mri/thalamus_sub-0025411_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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