[DATALAD RUNCMD] Compute BNU_2/sub-0025952/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025952/ses-2/anat/sub-0025952_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025952/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025952/ses-2/label/catROI_sub-0025952_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/JZ/MD5E-s57940--106327669618a95a8d9fb42532e0566b.mat/MD5E-s57940--106327669618a95a8d9fb42532e0566b.mat

BNU_2/sub-0025952/ses-2/label/catROI_sub-0025952_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/fj/MD5E-s188783--4b5b45041d93ac8623a2646db434c8f8.xml/MD5E-s188783--4b5b45041d93ac8623a2646db434c8f8.xml

BNU_2/sub-0025952/ses-2/label/catROIs_sub-0025952_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/7M/MD5E-s120005--6a9c93ae80688ecb4f49cb031d712261.mat/MD5E-s120005--6a9c93ae80688ecb4f49cb031d712261.mat

BNU_2/sub-0025952/ses-2/label/catROIs_sub-0025952_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/8k/MD5E-s332142--bb9e7261dc18e1c2c8c4fd34c182214d.xml/MD5E-s332142--bb9e7261dc18e1c2c8c4fd34c182214d.xml

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/Kq/MD5E-s166801--1f42dbfee4d961a0b3ac914a4d1388c8.nii.gz/MD5E-s166801--1f42dbfee4d961a0b3ac914a4d1388c8.nii.gz

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/j7/MD5E-s185935--41042d95f9110dfcf96bfa5cf6c8d0fb.nii.gz/MD5E-s185935--41042d95f9110dfcf96bfa5cf6c8d0fb.nii.gz

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/Gw/MD5E-s250926--c6dee1c03f74c308a0316e46737bec99.nii.gz/MD5E-s250926--c6dee1c03f74c308a0316e46737bec99.nii.gz

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025952/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/QQ/MD5E-s279000--bafd3edeaf5f26d837d958fbf8f9bb68.nii.gz/MD5E-s279000--bafd3edeaf5f26d837d958fbf8f9bb68.nii.gz

BNU_2/sub-0025952/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025952/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/wf/MD5E-s25234--ccecaff5176fbc9525cfd11c22fe7d33.nii.gz/MD5E-s25234--ccecaff5176fbc9525cfd11c22fe7d33.nii.gz

BNU_2/sub-0025952/ses-2/mri/aal3_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025952/ses-2/mri/aal3_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/pM/MD5E-s187605--18738d17a31c0ba99a3abb0097049391.nii.gz/MD5E-s187605--18738d17a31c0ba99a3abb0097049391.nii.gz

BNU_2/sub-0025952/ses-2/mri/anatomy3_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025952/ses-2/mri/anatomy3_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/pV/MD5E-s135573--be9471568a4048f81293425b29fe4da2.nii.gz/MD5E-s135573--be9471568a4048f81293425b29fe4da2.nii.gz

BNU_2/sub-0025952/ses-2/mri/anon_misub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/z5/MD5E-s4548462--8f4c9be8dc33b7a09a06a686caca73a3.nii.gz/MD5E-s4548462--8f4c9be8dc33b7a09a06a686caca73a3.nii.gz

BNU_2/sub-0025952/ses-2/mri/anon_msub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/P9/MD5E-s10686399--f2e0b6d7bc1fbfd728e889d7c6e51f1c.nii.gz/MD5E-s10686399--f2e0b6d7bc1fbfd728e889d7c6e51f1c.nii.gz

BNU_2/sub-0025952/ses-2/mri/cat_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/Mj/MD5E-s102039--9b1e9c7807cb36f6aa50047f21f33683.nii.gz/MD5E-s102039--9b1e9c7807cb36f6aa50047f21f33683.nii.gz

BNU_2/sub-0025952/ses-2/mri/cobra_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025952/ses-2/mri/cobra_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/jP/MD5E-s48217--03087ffda1b263871d6bfaf344d6d00c.nii.gz/MD5E-s48217--03087ffda1b263871d6bfaf344d6d00c.nii.gz

BNU_2/sub-0025952/ses-2/mri/hammers_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025952/ses-2/mri/hammers_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/gm/MD5E-s149129--f652e1e67fb55badd59f35b1dd5e4f9d.nii.gz/MD5E-s149129--f652e1e67fb55badd59f35b1dd5e4f9d.nii.gz

BNU_2/sub-0025952/ses-2/mri/ibsr_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025952/ses-2/mri/ibsr_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/fx/MD5E-s156769--e0c4ce6ec08da85b37ec3da16357a1a1.nii.gz/MD5E-s156769--e0c4ce6ec08da85b37ec3da16357a1a1.nii.gz

BNU_2/sub-0025952/ses-2/mri/it_sub-0025952_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/mj/MD5E-s283--ee055cea802c20aa8020ca9b4ce1f2f4.mat/MD5E-s283--ee055cea802c20aa8020ca9b4ce1f2f4.mat

BNU_2/sub-0025952/ses-2/mri/it_sub-0025952_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/1q/MD5E-s283--240c2906e6e8fc11a1efb481bcf3eba0.mat/MD5E-s283--240c2906e6e8fc11a1efb481bcf3eba0.mat

BNU_2/sub-0025952/ses-2/mri/iy_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/0x/MD5E-s47990140--48f8036e297cfe0a19cd1f2ae84b4f8a.nii.gz/MD5E-s47990140--48f8036e297cfe0a19cd1f2ae84b4f8a.nii.gz

BNU_2/sub-0025952/ses-2/mri/julichbrain_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025952/ses-2/mri/julichbrain_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/K0/MD5E-s200160--0910cd3a0461e7e65427a2a4aa5b618c.nii.gz/MD5E-s200160--0910cd3a0461e7e65427a2a4aa5b618c.nii.gz

BNU_2/sub-0025952/ses-2/mri/lpba40_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025952/ses-2/mri/lpba40_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/k9/MD5E-s145473--5c8483ea213a5193ab23aaf19ab5169c.nii.gz/MD5E-s145473--5c8483ea213a5193ab23aaf19ab5169c.nii.gz

BNU_2/sub-0025952/ses-2/mri/m0wp1sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/J3/MD5E-s2563972--2025e872eb0a3392f59426f6cf12a85c.nii.gz/MD5E-s2563972--2025e872eb0a3392f59426f6cf12a85c.nii.gz

BNU_2/sub-0025952/ses-2/mri/m0wp2sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/pj/MD5E-s2286338--6ee4e51a4a25938947aa44caf01fb6f8.nii.gz/MD5E-s2286338--6ee4e51a4a25938947aa44caf01fb6f8.nii.gz

BNU_2/sub-0025952/ses-2/mri/m0wp3sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/v7/MD5E-s2552627--17cf6e266b530d16e9d180e43192f4ba.nii.gz/MD5E-s2552627--17cf6e266b530d16e9d180e43192f4ba.nii.gz

BNU_2/sub-0025952/ses-2/mri/mori_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025952/ses-2/mri/mori_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/X2/MD5E-s175138--9b73861d65dfc3774f1e255140aa18a7.nii.gz/MD5E-s175138--9b73861d65dfc3774f1e255140aa18a7.nii.gz

BNU_2/sub-0025952/ses-2/mri/mwp1sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/w1/MD5E-s2566635--3bf70d63ed77979e9d4395813a6aeb98.nii.gz/MD5E-s2566635--3bf70d63ed77979e9d4395813a6aeb98.nii.gz

BNU_2/sub-0025952/ses-2/mri/mwp2sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/f2/MD5E-s2280274--2846f1f8386f043674ab9cc8cc7a2c7e.nii.gz/MD5E-s2280274--2846f1f8386f043674ab9cc8cc7a2c7e.nii.gz

BNU_2/sub-0025952/ses-2/mri/mwp3sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/zx/MD5E-s2549247--a302d71f0fe123f1faedcafae9c63414.nii.gz/MD5E-s2549247--a302d71f0fe123f1faedcafae9c63414.nii.gz

BNU_2/sub-0025952/ses-2/mri/neuromorphometrics_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025952/ses-2/mri/neuromorphometrics_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/jQ/MD5E-s201621--bbcc5ea4bbe5ae9df5174f9f9dd0f968.nii.gz/MD5E-s201621--bbcc5ea4bbe5ae9df5174f9f9dd0f968.nii.gz

BNU_2/sub-0025952/ses-2/mri/p0sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/gF/MD5E-s625372--770f2bb42c7acc18e83ca3ce2fe805f6.nii.gz/MD5E-s625372--770f2bb42c7acc18e83ca3ce2fe805f6.nii.gz

BNU_2/sub-0025952/ses-2/mri/p1sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/40/Qq/MD5E-s657758--19ee43d6e593cfac4f6a6e3003aa9a2a.nii.gz/MD5E-s657758--19ee43d6e593cfac4f6a6e3003aa9a2a.nii.gz

BNU_2/sub-0025952/ses-2/mri/p2sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/kw/MD5E-s420240--e24a256a061df210d2efd6c2c1c42167.nii.gz/MD5E-s420240--e24a256a061df210d2efd6c2c1c42167.nii.gz

BNU_2/sub-0025952/ses-2/mri/p3sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025952/ses-2/mri/rp1sub-0025952_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/FF/MD5E-s436389--f77c49f2ed0f8702f49ee9711ef0ce3a.nii.gz/MD5E-s436389--f77c49f2ed0f8702f49ee9711ef0ce3a.nii.gz

BNU_2/sub-0025952/ses-2/mri/rp2sub-0025952_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025952/ses-2/mri/rp3sub-0025952_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025952/ses-2/mri/t_sub-0025952_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/5p/MD5E-s284--368434556d0c46563bedb5d7af8b8f5b.mat/MD5E-s284--368434556d0c46563bedb5d7af8b8f5b.mat

BNU_2/sub-0025952/ses-2/mri/t_sub-0025952_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/Jx/MD5E-s284--b3c55e339706388e78b071572db9b502.mat/MD5E-s284--b3c55e339706388e78b071572db9b502.mat

BNU_2/sub-0025952/ses-2/mri/thalamus_sub-0025952_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025952/ses-2/mri/thalamus_sub-0025952_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/Wk/MD5E-s16387--67cefdff3934046120e6da040dfcf893.nii.gz/MD5E-s16387--67cefdff3934046120e6da040dfcf893.nii.gz

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