[DATALAD RUNCMD] Compute IACAS/sub-0025463/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025463/ses-3/anat/sub-0025463_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025463/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025463/ses-3/label/catROI_sub-0025463_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/mk/MD5E-s58022--631f0817cb78a7617aef20ae322cc3b7.mat/MD5E-s58022--631f0817cb78a7617aef20ae322cc3b7.mat

IACAS/sub-0025463/ses-3/label/catROI_sub-0025463_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/wk/MD5E-s188893--d88361dfb6801d9e2ad5936255461b77.xml/MD5E-s188893--d88361dfb6801d9e2ad5936255461b77.xml

IACAS/sub-0025463/ses-3/label/catROIs_sub-0025463_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/33/MD5E-s120095--8714240bfc998169e3653568cd733d5c.mat/MD5E-s120095--8714240bfc998169e3653568cd733d5c.mat

IACAS/sub-0025463/ses-3/label/catROIs_sub-0025463_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/f6/MD5E-s332128--89410381fd8f5db7c4b8a349e22deb41.xml/MD5E-s332128--89410381fd8f5db7c4b8a349e22deb41.xml

IACAS/sub-0025463/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025463/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/kv/MD5E-s159295--cc9741a046e2a0a73881c03dbc5f5117.nii.gz/MD5E-s159295--cc9741a046e2a0a73881c03dbc5f5117.nii.gz

IACAS/sub-0025463/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025463/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/m3/MD5E-s177453--2377a2c63346db7eeadb040848f59fc6.nii.gz/MD5E-s177453--2377a2c63346db7eeadb040848f59fc6.nii.gz

IACAS/sub-0025463/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025463/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/gk/MD5E-s246048--17a2bb07d7d0698ca84b4b09d26e300c.nii.gz/MD5E-s246048--17a2bb07d7d0698ca84b4b09d26e300c.nii.gz

IACAS/sub-0025463/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025463/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/1w/MD5E-s273653--dc80dbe85f31b851b1fc60a553f8c9b1.nii.gz/MD5E-s273653--dc80dbe85f31b851b1fc60a553f8c9b1.nii.gz

IACAS/sub-0025463/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025463/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/zp/MD5E-s17466--918a09c3cb3a6ff7a3f926033430af74.nii.gz/MD5E-s17466--918a09c3cb3a6ff7a3f926033430af74.nii.gz

IACAS/sub-0025463/ses-3/mri/aal3_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025463/ses-3/mri/aal3_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/VM/MD5E-s180298--cced304dfc2620df62067d0dc9b8889d.nii.gz/MD5E-s180298--cced304dfc2620df62067d0dc9b8889d.nii.gz

IACAS/sub-0025463/ses-3/mri/anatomy3_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025463/ses-3/mri/anatomy3_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/fV/MD5E-s122720--1758425367244b6b81eb928967412586.nii.gz/MD5E-s122720--1758425367244b6b81eb928967412586.nii.gz

IACAS/sub-0025463/ses-3/mri/anon_misub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/xz/MD5E-s6320473--a477645e27279343a26fe58488714c5f.nii.gz/MD5E-s6320473--a477645e27279343a26fe58488714c5f.nii.gz

IACAS/sub-0025463/ses-3/mri/anon_msub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/49/MD5E-s5979583--2a5acad2cfef8b7f21da6c2b0e05edac.nii.gz/MD5E-s5979583--2a5acad2cfef8b7f21da6c2b0e05edac.nii.gz

IACAS/sub-0025463/ses-3/mri/cat_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/W5/MD5E-s93348--6c85ed084d33481b2f1b3ad639e9785a.nii.gz/MD5E-s93348--6c85ed084d33481b2f1b3ad639e9785a.nii.gz

IACAS/sub-0025463/ses-3/mri/cobra_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025463/ses-3/mri/cobra_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pg/40/MD5E-s40653--ca14c77c7667ed444949e9e2c7b1ee2c.nii.gz/MD5E-s40653--ca14c77c7667ed444949e9e2c7b1ee2c.nii.gz

IACAS/sub-0025463/ses-3/mri/hammers_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025463/ses-3/mri/hammers_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/FF/MD5E-s137574--ef02ddd1889a25da0d2c5ff06ca03e60.nii.gz/MD5E-s137574--ef02ddd1889a25da0d2c5ff06ca03e60.nii.gz

IACAS/sub-0025463/ses-3/mri/ibsr_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025463/ses-3/mri/ibsr_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/Jf/MD5E-s150953--5d0fdfb7aaff244a2be8988850613847.nii.gz/MD5E-s150953--5d0fdfb7aaff244a2be8988850613847.nii.gz

IACAS/sub-0025463/ses-3/mri/it_sub-0025463_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/X7/MD5E-s284--c463c192fbb134e6c551d7dd3847aa6c.mat/MD5E-s284--c463c192fbb134e6c551d7dd3847aa6c.mat

IACAS/sub-0025463/ses-3/mri/it_sub-0025463_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/XZ/MD5E-s283--8e784a0a620c1c3e2a4a9193702ade8f.mat/MD5E-s283--8e784a0a620c1c3e2a4a9193702ade8f.mat

IACAS/sub-0025463/ses-3/mri/iy_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/kZ/MD5E-s45722944--4eb06bba7debac5027bf3c4baf95eb11.nii.gz/MD5E-s45722944--4eb06bba7debac5027bf3c4baf95eb11.nii.gz

IACAS/sub-0025463/ses-3/mri/julichbrain_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025463/ses-3/mri/julichbrain_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/K4/MD5E-s187802--2e3b6187cc199216c4595c6c44a8f9e4.nii.gz/MD5E-s187802--2e3b6187cc199216c4595c6c44a8f9e4.nii.gz

IACAS/sub-0025463/ses-3/mri/lpba40_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IACAS/sub-0025463/ses-3/mri/lpba40_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/8f/MD5E-s137049--f5e49600015137a00304994022089b36.nii.gz/MD5E-s137049--f5e49600015137a00304994022089b36.nii.gz

IACAS/sub-0025463/ses-3/mri/m0wp1sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/99/MD5E-s2575369--83d6513bd4a205aad3fd41014bf215df.nii.gz/MD5E-s2575369--83d6513bd4a205aad3fd41014bf215df.nii.gz

IACAS/sub-0025463/ses-3/mri/m0wp2sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/15/MD5E-s2366774--9608572284e85ebf314d87cd0a32ee04.nii.gz/MD5E-s2366774--9608572284e85ebf314d87cd0a32ee04.nii.gz

IACAS/sub-0025463/ses-3/mri/m0wp3sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/1k/MD5E-s2529871--336f6838219ad6acbb6a2c0f02db39b2.nii.gz/MD5E-s2529871--336f6838219ad6acbb6a2c0f02db39b2.nii.gz

IACAS/sub-0025463/ses-3/mri/mori_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IACAS/sub-0025463/ses-3/mri/mori_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/mg/MD5E-s165166--46ddbb28c719f3dbc905191e5941cd70.nii.gz/MD5E-s165166--46ddbb28c719f3dbc905191e5941cd70.nii.gz

IACAS/sub-0025463/ses-3/mri/mwp1sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/P3/MD5E-s2576015--e4023a2ca6ccea993d03782dfe998233.nii.gz/MD5E-s2576015--e4023a2ca6ccea993d03782dfe998233.nii.gz

IACAS/sub-0025463/ses-3/mri/mwp2sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/Mw/MD5E-s2362669--e0cf0b6cdd076b97e3437162705952d0.nii.gz/MD5E-s2362669--e0cf0b6cdd076b97e3437162705952d0.nii.gz

IACAS/sub-0025463/ses-3/mri/mwp3sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/pX/MD5E-s2526071--c0fc4d70361d94d61f64e6ef037eef5d.nii.gz/MD5E-s2526071--c0fc4d70361d94d61f64e6ef037eef5d.nii.gz

IACAS/sub-0025463/ses-3/mri/neuromorphometrics_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

IACAS/sub-0025463/ses-3/mri/neuromorphometrics_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/mm/MD5E-s191556--45c4249a11ff20a7ab547752ceace683.nii.gz/MD5E-s191556--45c4249a11ff20a7ab547752ceace683.nii.gz

IACAS/sub-0025463/ses-3/mri/p0sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/fV/MD5E-s669408--989c7fd3a5960dd8deafd095bef32cdc.nii.gz/MD5E-s669408--989c7fd3a5960dd8deafd095bef32cdc.nii.gz

IACAS/sub-0025463/ses-3/mri/p1sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/Vz/MD5E-s721130--4291d0fbbbfe674e1606ab0b0cf3f2e4.nii.gz/MD5E-s721130--4291d0fbbbfe674e1606ab0b0cf3f2e4.nii.gz

IACAS/sub-0025463/ses-3/mri/p2sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/gQ/MD5E-s474993--f71d190f1d84c2fd2350688c9c3a4e60.nii.gz/MD5E-s474993--f71d190f1d84c2fd2350688c9c3a4e60.nii.gz

IACAS/sub-0025463/ses-3/mri/p3sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/Q7/MD5E-s399530--aa318007938d123923fd1088f63b99ad.nii.gz/MD5E-s399530--aa318007938d123923fd1088f63b99ad.nii.gz

IACAS/sub-0025463/ses-3/mri/rp1sub-0025463_ses-3_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/Fk/MD5E-s446853--e529ac2a48369135c78387da02174b0c.nii.gz/MD5E-s446853--e529ac2a48369135c78387da02174b0c.nii.gz

IACAS/sub-0025463/ses-3/mri/rp2sub-0025463_ses-3_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/G1/MD5E-s312291--eb8b8854c5c148ab0aaaa8d0cd7b3cef.nii.gz/MD5E-s312291--eb8b8854c5c148ab0aaaa8d0cd7b3cef.nii.gz

IACAS/sub-0025463/ses-3/mri/rp3sub-0025463_ses-3_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/01/MD5E-s287971--f08de97b5953409fecc02303ea177419.nii.gz/MD5E-s287971--f08de97b5953409fecc02303ea177419.nii.gz

IACAS/sub-0025463/ses-3/mri/t_sub-0025463_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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IACAS/sub-0025463/ses-3/mri/t_sub-0025463_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/Kp/MD5E-s283--bcac38680b85abf1f3ffe96d4df2e7fc.mat/MD5E-s283--bcac38680b85abf1f3ffe96d4df2e7fc.mat

IACAS/sub-0025463/ses-3/mri/thalamus_sub-0025463_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025463/ses-3/mri/thalamus_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025463/ses-3/mri/wj_sub-0025463_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/v6/MD5E-s5616089--9945617a81628eeeea13d22b629616a1.nii.gz/MD5E-s5616089--9945617a81628eeeea13d22b629616a1.nii.gz

IACAS/sub-0025463/ses-3/mri/wmisub-0025463_ses-3_run-1_T1w.nii.gz

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