[DATALAD RUNCMD] Compute BNU_2/sub-0025931/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025931/ses-1/anat/sub-0025931_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025931/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025931/ses-1/label/catROI_sub-0025931_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/6f/MD5E-s61323--dabb841ee5d12d3f86ab4b7e25a49883.mat/MD5E-s61323--dabb841ee5d12d3f86ab4b7e25a49883.mat

BNU_2/sub-0025931/ses-1/label/catROI_sub-0025931_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/q3/MD5E-s188747--42b26803c65220eb912683ec92ab86f3.xml/MD5E-s188747--42b26803c65220eb912683ec92ab86f3.xml

BNU_2/sub-0025931/ses-1/label/catROIs_sub-0025931_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/2q/MD5E-s120025--8f074701353d08668493b5ec4bd18999.mat/MD5E-s120025--8f074701353d08668493b5ec4bd18999.mat

BNU_2/sub-0025931/ses-1/label/catROIs_sub-0025931_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/vx/MD5E-s332160--1f57368648b1d88e6fa8d69c1d5179e2.xml/MD5E-s332160--1f57368648b1d88e6fa8d69c1d5179e2.xml

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/G9/MD5E-s159805--2c2bb96cf64141e54c838e6b2a963874.nii.gz/MD5E-s159805--2c2bb96cf64141e54c838e6b2a963874.nii.gz

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/KX/MD5E-s178964--10fbb65f6f80fd7186a5be3c55debb44.nii.gz/MD5E-s178964--10fbb65f6f80fd7186a5be3c55debb44.nii.gz

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/2m/MD5E-s239415--139e68c40999b352992758cbf0946ea9.nii.gz/MD5E-s239415--139e68c40999b352992758cbf0946ea9.nii.gz

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025931/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wz/0W/MD5E-s266800--eaa2ae10a334fb6315c30abb99018e0f.nii.gz/MD5E-s266800--eaa2ae10a334fb6315c30abb99018e0f.nii.gz

BNU_2/sub-0025931/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025931/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/37/MD5E-s20649--d6f933885b23116c4168b7135a956223.nii.gz/MD5E-s20649--d6f933885b23116c4168b7135a956223.nii.gz

BNU_2/sub-0025931/ses-1/mri/aal3_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025931/ses-1/mri/aal3_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/5m/MD5E-s180539--2411af4bde84a3a83dd717d029e056a3.nii.gz/MD5E-s180539--2411af4bde84a3a83dd717d029e056a3.nii.gz

BNU_2/sub-0025931/ses-1/mri/anatomy3_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025931/ses-1/mri/anatomy3_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/9j/MD5E-s124580--ef130d1f6dca118fa362d5fb9389324a.nii.gz/MD5E-s124580--ef130d1f6dca118fa362d5fb9389324a.nii.gz

BNU_2/sub-0025931/ses-1/mri/anon_misub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/QQ/MD5E-s4272492--5b691fe359f680b80e1f531b031bd381.nii.gz/MD5E-s4272492--5b691fe359f680b80e1f531b031bd381.nii.gz

BNU_2/sub-0025931/ses-1/mri/anon_msub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/08/MD5E-s7338850--2a8b197f654a368a36a1bebfa28ac97c.nii.gz/MD5E-s7338850--2a8b197f654a368a36a1bebfa28ac97c.nii.gz

BNU_2/sub-0025931/ses-1/mri/cat_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/9w/MD5E-s95359--08ff5c1187d0811581846ef202b24bd9.nii.gz/MD5E-s95359--08ff5c1187d0811581846ef202b24bd9.nii.gz

BNU_2/sub-0025931/ses-1/mri/cobra_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025931/ses-1/mri/cobra_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/17/MD5E-s41125--6972186afbe3bf5f9b87daec35dd1ab0.nii.gz/MD5E-s41125--6972186afbe3bf5f9b87daec35dd1ab0.nii.gz

BNU_2/sub-0025931/ses-1/mri/hammers_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025931/ses-1/mri/hammers_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/vZ/MD5E-s139479--ae1973c1e331adca1e09747b53f27f41.nii.gz/MD5E-s139479--ae1973c1e331adca1e09747b53f27f41.nii.gz

BNU_2/sub-0025931/ses-1/mri/ibsr_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025931/ses-1/mri/ibsr_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/xZ/MD5E-s145743--25b5f6497340bd4cd1fcf8fbf0e85c48.nii.gz/MD5E-s145743--25b5f6497340bd4cd1fcf8fbf0e85c48.nii.gz

BNU_2/sub-0025931/ses-1/mri/it_sub-0025931_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/V3/MD5E-s283--42004ec1b3576cbf781b4549cf5c3def.mat/MD5E-s283--42004ec1b3576cbf781b4549cf5c3def.mat

BNU_2/sub-0025931/ses-1/mri/it_sub-0025931_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/4g/MD5E-s282--4f5df2a3e3b08a7edc62e118cf1ae1dd.mat/MD5E-s282--4f5df2a3e3b08a7edc62e118cf1ae1dd.mat

BNU_2/sub-0025931/ses-1/mri/iy_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/Xp/MD5E-s39100500--481ce31c1494db4823379daca3bde86e.nii.gz/MD5E-s39100500--481ce31c1494db4823379daca3bde86e.nii.gz

BNU_2/sub-0025931/ses-1/mri/julichbrain_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025931/ses-1/mri/julichbrain_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/XZ/MD5E-s187954--f2fc77ec601ff9d5dd048af296b88751.nii.gz/MD5E-s187954--f2fc77ec601ff9d5dd048af296b88751.nii.gz

BNU_2/sub-0025931/ses-1/mri/lpba40_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025931/ses-1/mri/lpba40_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/Wf/MD5E-s136484--2eda9b9382ab468fbcb2bec5e59e2db9.nii.gz/MD5E-s136484--2eda9b9382ab468fbcb2bec5e59e2db9.nii.gz

BNU_2/sub-0025931/ses-1/mri/m0wp1sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pQ/FX/MD5E-s2584439--a46c26b44ca1b165fd6f574b3095dfcc.nii.gz/MD5E-s2584439--a46c26b44ca1b165fd6f574b3095dfcc.nii.gz

BNU_2/sub-0025931/ses-1/mri/m0wp2sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/0m/MD5E-s2287279--55c9033fbb9cd19b355fc6d96ced3d7f.nii.gz/MD5E-s2287279--55c9033fbb9cd19b355fc6d96ced3d7f.nii.gz

BNU_2/sub-0025931/ses-1/mri/m0wp3sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/8G/MD5E-s2552910--b762fdb0d005eff7d9d7ed88709a2562.nii.gz/MD5E-s2552910--b762fdb0d005eff7d9d7ed88709a2562.nii.gz

BNU_2/sub-0025931/ses-1/mri/mori_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025931/ses-1/mri/mori_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/V0/MD5E-s165706--d3e2c52be3dffcfedd52c35ccc0ec491.nii.gz/MD5E-s165706--d3e2c52be3dffcfedd52c35ccc0ec491.nii.gz

BNU_2/sub-0025931/ses-1/mri/mwp1sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/pX/MD5E-s2584963--3e99105394cad9f713ca270728f7c6f4.nii.gz/MD5E-s2584963--3e99105394cad9f713ca270728f7c6f4.nii.gz

BNU_2/sub-0025931/ses-1/mri/mwp2sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/vF/MD5E-s2283894--8f943544088c6c0402ef171df08c6149.nii.gz/MD5E-s2283894--8f943544088c6c0402ef171df08c6149.nii.gz

BNU_2/sub-0025931/ses-1/mri/mwp3sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/wm/MD5E-s2551078--7830391c769160de18353d4a112767ce.nii.gz/MD5E-s2551078--7830391c769160de18353d4a112767ce.nii.gz

BNU_2/sub-0025931/ses-1/mri/neuromorphometrics_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025931/ses-1/mri/neuromorphometrics_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025931/ses-1/mri/p0sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/FW/MD5E-s844298--72bf822572a0d84508503ff53db605b4.nii.gz/MD5E-s844298--72bf822572a0d84508503ff53db605b4.nii.gz

BNU_2/sub-0025931/ses-1/mri/p1sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/4Z/MD5E-s853126--27cd9cabc727bdc5d88edfe6fffecb4b.nii.gz/MD5E-s853126--27cd9cabc727bdc5d88edfe6fffecb4b.nii.gz

BNU_2/sub-0025931/ses-1/mri/p2sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/5G/MD5E-s567207--43747a2f7122b5ca92e620d6b617e3aa.nii.gz/MD5E-s567207--43747a2f7122b5ca92e620d6b617e3aa.nii.gz

BNU_2/sub-0025931/ses-1/mri/p3sub-0025931_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025931/ses-1/mri/rp1sub-0025931_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025931/ses-1/mri/rp2sub-0025931_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025931/ses-1/mri/rp3sub-0025931_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025931/ses-1/mri/t_sub-0025931_ses-1_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025931/ses-1/mri/t_sub-0025931_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/8k/MD5E-s283--2f0e4ef8cd91d4eb083586cad9227e69.mat/MD5E-s283--2f0e4ef8cd91d4eb083586cad9227e69.mat

BNU_2/sub-0025931/ses-1/mri/thalamus_sub-0025931_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025931/ses-1/mri/thalamus_sub-0025931_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/Zx/MD5E-s12710--94b1f767c143cb3fd422302e285156c7.nii.gz/MD5E-s12710--94b1f767c143cb3fd422302e285156c7.nii.gz

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