[DATALAD RUNCMD] Compute IPCAS_3/sub-0025578/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025578/ses-1/anat/sub-0025578_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025578/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025578/ses-1/label/catROI_sub-0025578_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/Z8/MD5E-s61359--45db98c86fe5835d903355a23aca89ee.mat/MD5E-s61359--45db98c86fe5835d903355a23aca89ee.mat

IPCAS_3/sub-0025578/ses-1/label/catROI_sub-0025578_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/1F/MD5E-s188985--19eb3c7cae59b3b97b238a0592cd2ec3.xml/MD5E-s188985--19eb3c7cae59b3b97b238a0592cd2ec3.xml

IPCAS_3/sub-0025578/ses-1/label/catROIs_sub-0025578_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/Fw/MD5E-s120045--fef40f2a1e7a7246375c96366aa0933e.mat/MD5E-s120045--fef40f2a1e7a7246375c96366aa0933e.mat

IPCAS_3/sub-0025578/ses-1/label/catROIs_sub-0025578_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/ZJ/MD5E-s332139--1ab31f79b178ff99eb0a233a95924017.xml/MD5E-s332139--1ab31f79b178ff99eb0a233a95924017.xml

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/V8/MD5E-s147587--88051f71c564d78051051af39baecbf3.nii.gz/MD5E-s147587--88051f71c564d78051051af39baecbf3.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/4p/MD5E-s164067--8b6abfae06ef498cdbe6c71be66278f7.nii.gz/MD5E-s164067--8b6abfae06ef498cdbe6c71be66278f7.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/1J/MD5E-s220070--a66da05709866d9d28289ab71b7e0c02.nii.gz/MD5E-s220070--a66da05709866d9d28289ab71b7e0c02.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025578/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/1V/MD5E-s243403--1f63e6dd74b3d4ee6f1a9c33ed8b49f9.nii.gz/MD5E-s243403--1f63e6dd74b3d4ee6f1a9c33ed8b49f9.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025578/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/g8/MD5E-s19726--85a0b3c0953f80532bdd8769a5c8c234.nii.gz/MD5E-s19726--85a0b3c0953f80532bdd8769a5c8c234.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/aal3_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_3/sub-0025578/ses-1/mri/aal3_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/91/MD5E-s165389--854c5dbe96e91b34ee04ef2d53119b60.nii.gz/MD5E-s165389--854c5dbe96e91b34ee04ef2d53119b60.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/anatomy3_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_3/sub-0025578/ses-1/mri/anatomy3_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/Kv/MD5E-s118027--16fcfb4cae13386040d03ee606489d84.nii.gz/MD5E-s118027--16fcfb4cae13386040d03ee606489d84.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/anon_misub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/qP/MD5E-s4107983--46fead031019a8668041c74802618af9.nii.gz/MD5E-s4107983--46fead031019a8668041c74802618af9.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/anon_msub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/Vg/MD5E-s7338884--3f986eb83675582c66aad5cb13298f92.nii.gz/MD5E-s7338884--3f986eb83675582c66aad5cb13298f92.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/cat_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025578/ses-1/mri/cobra_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_3/sub-0025578/ses-1/mri/cobra_sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/hammers_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_3/sub-0025578/ses-1/mri/hammers_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025578/ses-1/mri/ibsr_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_3/sub-0025578/ses-1/mri/ibsr_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/6p/MD5E-s136320--95c1e1386e87b7533b62ae8b7225ac69.nii.gz/MD5E-s136320--95c1e1386e87b7533b62ae8b7225ac69.nii.gz

IPCAS_3/sub-0025578/ses-1/mri/it_sub-0025578_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/25/Zf/MD5E-s282--1a7d67f020e4770fedc53b29228a71b4.mat/MD5E-s282--1a7d67f020e4770fedc53b29228a71b4.mat

IPCAS_3/sub-0025578/ses-1/mri/it_sub-0025578_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/5V/MD5E-s284--29ab003448efcb427cc8e49bafd44182.mat/MD5E-s284--29ab003448efcb427cc8e49bafd44182.mat

IPCAS_3/sub-0025578/ses-1/mri/iy_sub-0025578_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025578/ses-1/mri/julichbrain_sub-0025578_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025578/ses-1/mri/julichbrain_sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/lpba40_sub-0025578_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025578/ses-1/mri/lpba40_sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/m0wp1sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/m0wp2sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/m0wp3sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/mori_sub-0025578_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025578/ses-1/mri/mori_sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/mwp1sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/mwp2sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/mwp3sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/neuromorphometrics_sub-0025578_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025578/ses-1/mri/neuromorphometrics_sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/p0sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/p1sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/p2sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/p3sub-0025578_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/rp1sub-0025578_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/rp2sub-0025578_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/rp3sub-0025578_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025578/ses-1/mri/t_sub-0025578_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025578/ses-1/mri/t_sub-0025578_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025578/ses-1/mri/thalamus_sub-0025578_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025578/ses-1/mri/thalamus_sub-0025578_ses-1_run-1_T1w.nii.gz

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