[DATALAD RUNCMD] Compute LMU_3/sub-0025406/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025406/ses-1/anat/sub-0025406_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025406/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025406/ses-1/label/catROI_sub-0025406_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/j6/MD5E-s58234--77615519de25b4fb385233ec4a76cbff.mat/MD5E-s58234--77615519de25b4fb385233ec4a76cbff.mat

LMU_3/sub-0025406/ses-1/label/catROI_sub-0025406_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/P0/MD5E-s188650--74c188be842253d55aa32ad9519562c9.xml/MD5E-s188650--74c188be842253d55aa32ad9519562c9.xml

LMU_3/sub-0025406/ses-1/label/catROIs_sub-0025406_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/FZ/MD5E-s120095--2f31f295506b48d718f7074b8011ac44.mat/MD5E-s120095--2f31f295506b48d718f7074b8011ac44.mat

LMU_3/sub-0025406/ses-1/label/catROIs_sub-0025406_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/p0/MD5E-s332153--ad8c6d4dad9b58e0886f0ba494c81868.xml/MD5E-s332153--ad8c6d4dad9b58e0886f0ba494c81868.xml

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/kX/MD5E-s186466--34ed6cee26700a579ea485339181bfbd.nii.gz/MD5E-s186466--34ed6cee26700a579ea485339181bfbd.nii.gz

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/fF/MD5E-s209869--02c80356e1de6d7d0b169cfbcbec7444.nii.gz/MD5E-s209869--02c80356e1de6d7d0b169cfbcbec7444.nii.gz

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/MW/MD5E-s279685--c7a0570d19a86462f9d9a0fba61a8870.nii.gz/MD5E-s279685--c7a0570d19a86462f9d9a0fba61a8870.nii.gz

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025406/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/Vj/MD5E-s312365--a7e6eac31a143b4bcf508da53a70f95a.nii.gz/MD5E-s312365--a7e6eac31a143b4bcf508da53a70f95a.nii.gz

LMU_3/sub-0025406/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025406/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/jm/MD5E-s24556--a65379a09248c3c5019231f1a0400c88.nii.gz/MD5E-s24556--a65379a09248c3c5019231f1a0400c88.nii.gz

LMU_3/sub-0025406/ses-1/mri/aal3_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025406/ses-1/mri/aal3_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/8z/MD5E-s213981--cdd13d22de308d936749a922dacb91ad.nii.gz/MD5E-s213981--cdd13d22de308d936749a922dacb91ad.nii.gz

LMU_3/sub-0025406/ses-1/mri/anatomy3_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025406/ses-1/mri/anatomy3_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/z0/MD5E-s153299--f2baf1def1b9bb95dee3f4ce09f76306.nii.gz/MD5E-s153299--f2baf1def1b9bb95dee3f4ce09f76306.nii.gz

LMU_3/sub-0025406/ses-1/mri/anon_misub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/7q/MD5E-s9567047--6d40655e00e7dcd20328c38084c0c735.nii.gz/MD5E-s9567047--6d40655e00e7dcd20328c38084c0c735.nii.gz

LMU_3/sub-0025406/ses-1/mri/anon_msub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/qw/MD5E-s10199329--95450cf27bd97e2758e3a8b3e7884b34.nii.gz/MD5E-s10199329--95450cf27bd97e2758e3a8b3e7884b34.nii.gz

LMU_3/sub-0025406/ses-1/mri/cat_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/vj/MD5E-s118295--a363325a49872137db7bb8faea236fbe.nii.gz/MD5E-s118295--a363325a49872137db7bb8faea236fbe.nii.gz

LMU_3/sub-0025406/ses-1/mri/cobra_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025406/ses-1/mri/cobra_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mz/3F/MD5E-s52073--99253794ef43096c31ce48f730220d6a.nii.gz/MD5E-s52073--99253794ef43096c31ce48f730220d6a.nii.gz

LMU_3/sub-0025406/ses-1/mri/hammers_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025406/ses-1/mri/hammers_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/FW/MD5E-s167861--66f395e0066cfe965282cb7d4f8c2c13.nii.gz/MD5E-s167861--66f395e0066cfe965282cb7d4f8c2c13.nii.gz

LMU_3/sub-0025406/ses-1/mri/ibsr_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025406/ses-1/mri/ibsr_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/P1/MD5E-s176683--6049512bbd843eb1a2e90ec9a2d19e44.nii.gz/MD5E-s176683--6049512bbd843eb1a2e90ec9a2d19e44.nii.gz

LMU_3/sub-0025406/ses-1/mri/it_sub-0025406_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/Kx/MD5E-s282--2f52a1739c2ad8d1a41cb05e646d29d2.mat/MD5E-s282--2f52a1739c2ad8d1a41cb05e646d29d2.mat

LMU_3/sub-0025406/ses-1/mri/it_sub-0025406_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/kM/MD5E-s281--8b58efabb19275ac88004b781fb9d45e.mat/MD5E-s281--8b58efabb19275ac88004b781fb9d45e.mat

LMU_3/sub-0025406/ses-1/mri/iy_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/P5/MD5E-s53094887--11b1176690e549f255340cddf09b8679.nii.gz/MD5E-s53094887--11b1176690e549f255340cddf09b8679.nii.gz

LMU_3/sub-0025406/ses-1/mri/julichbrain_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025406/ses-1/mri/julichbrain_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/x6/MD5E-s228090--ffcab68bbe830bff2f917c35a7503011.nii.gz/MD5E-s228090--ffcab68bbe830bff2f917c35a7503011.nii.gz

LMU_3/sub-0025406/ses-1/mri/lpba40_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025406/ses-1/mri/lpba40_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/gm/MD5E-s164013--36ec6d469e9deb410bf1e7cd77db1bd6.nii.gz/MD5E-s164013--36ec6d469e9deb410bf1e7cd77db1bd6.nii.gz

LMU_3/sub-0025406/ses-1/mri/m0wp1sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/w6/MD5E-s2578611--0860a58070969c83adf6d1f3feb7ad13.nii.gz/MD5E-s2578611--0860a58070969c83adf6d1f3feb7ad13.nii.gz

LMU_3/sub-0025406/ses-1/mri/m0wp2sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/Q8/MD5E-s2315738--c70531353f7d038300e8cb5cbaf74acc.nii.gz/MD5E-s2315738--c70531353f7d038300e8cb5cbaf74acc.nii.gz

LMU_3/sub-0025406/ses-1/mri/m0wp3sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/Vv/MD5E-s2618831--cccbbc689d0dc750b681b77b63e7c027.nii.gz/MD5E-s2618831--cccbbc689d0dc750b681b77b63e7c027.nii.gz

LMU_3/sub-0025406/ses-1/mri/mori_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025406/ses-1/mri/mori_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025406/ses-1/mri/mwp1sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/V2/MD5E-s2575978--67c55b3de846f7075673327f08e17737.nii.gz/MD5E-s2575978--67c55b3de846f7075673327f08e17737.nii.gz

LMU_3/sub-0025406/ses-1/mri/mwp2sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/41/MD5E-s2313984--b004485bfcd37f6329c6efc5990f279d.nii.gz/MD5E-s2313984--b004485bfcd37f6329c6efc5990f279d.nii.gz

LMU_3/sub-0025406/ses-1/mri/mwp3sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pQ/Xk/MD5E-s2615358--88fb7b1978f95cb783be39ebcca4b481.nii.gz/MD5E-s2615358--88fb7b1978f95cb783be39ebcca4b481.nii.gz

LMU_3/sub-0025406/ses-1/mri/neuromorphometrics_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025406/ses-1/mri/neuromorphometrics_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/gw/MD5E-s227153--0c2e065e6cd3ea300b096ccbb9704729.nii.gz/MD5E-s227153--0c2e065e6cd3ea300b096ccbb9704729.nii.gz

LMU_3/sub-0025406/ses-1/mri/p0sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/10/qG/MD5E-s750059--83646172405e7c14cf6c9312523d1569.nii.gz/MD5E-s750059--83646172405e7c14cf6c9312523d1569.nii.gz

LMU_3/sub-0025406/ses-1/mri/p1sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X4/9q/MD5E-s789322--f3ce2d5349e546abfb5c3088a48c0dc9.nii.gz/MD5E-s789322--f3ce2d5349e546abfb5c3088a48c0dc9.nii.gz

LMU_3/sub-0025406/ses-1/mri/p2sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/Pw/MD5E-s520879--977b829f69106b6d5ee5d7cc4c52eb17.nii.gz/MD5E-s520879--977b829f69106b6d5ee5d7cc4c52eb17.nii.gz

LMU_3/sub-0025406/ses-1/mri/p3sub-0025406_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025406/ses-1/mri/rp1sub-0025406_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025406/ses-1/mri/rp2sub-0025406_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025406/ses-1/mri/rp3sub-0025406_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025406/ses-1/mri/t_sub-0025406_ses-1_run-1_T1w_affine_reorient.mat

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LMU_3/sub-0025406/ses-1/mri/t_sub-0025406_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/Z1/MD5E-s284--08d5831266529acdf46b50f4652e1093.mat/MD5E-s284--08d5831266529acdf46b50f4652e1093.mat

LMU_3/sub-0025406/ses-1/mri/thalamus_sub-0025406_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025406/ses-1/mri/thalamus_sub-0025406_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025406/ses-1/mri/wj_sub-0025406_ses-1_run-1_T1w.nii.gz

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