[DATALAD RUNCMD] Compute IPCAS_3/sub-0025553/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025553/ses-1/anat/sub-0025553_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025553/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025553/ses-1/label/catROI_sub-0025553_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/fg/MD5E-s57930--0f8fa6ff99bc76ed945ea19ce50ca475.mat/MD5E-s57930--0f8fa6ff99bc76ed945ea19ce50ca475.mat

IPCAS_3/sub-0025553/ses-1/label/catROI_sub-0025553_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/04/MD5E-s188607--76e52b2e80dabfa0de2affd0c73e8fa5.xml/MD5E-s188607--76e52b2e80dabfa0de2affd0c73e8fa5.xml

IPCAS_3/sub-0025553/ses-1/label/catROIs_sub-0025553_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/G8/MD5E-s120099--e177c891d16b07c8bba78396a039d297.mat/MD5E-s120099--e177c891d16b07c8bba78396a039d297.mat

IPCAS_3/sub-0025553/ses-1/label/catROIs_sub-0025553_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/0Q/MD5E-s332203--1018db4621dbf4d1989140fa1cac49be.xml/MD5E-s332203--1018db4621dbf4d1989140fa1cac49be.xml

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/kQ/MD5E-s148469--03feed7b093469a8c88017992c7a20f7.nii.gz/MD5E-s148469--03feed7b093469a8c88017992c7a20f7.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/Zm/MD5E-s163895--fb28eaa2d35d1c5ff09a0698a2a612ad.nii.gz/MD5E-s163895--fb28eaa2d35d1c5ff09a0698a2a612ad.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/0q/MD5E-s221175--31264ce1cae03eb11eea1d407f451055.nii.gz/MD5E-s221175--31264ce1cae03eb11eea1d407f451055.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025553/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/25/MD5E-s244159--325404ffb3069ab189f9922f8826a66c.nii.gz/MD5E-s244159--325404ffb3069ab189f9922f8826a66c.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_3/sub-0025553/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/9w/MD5E-s19880--c67da96d9b0c5909a0acb448c0992e30.nii.gz/MD5E-s19880--c67da96d9b0c5909a0acb448c0992e30.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/aal3_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_3/sub-0025553/ses-1/mri/aal3_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/2M/MD5E-s166636--795feec7b7b39c8abb5e2aebfffec51d.nii.gz/MD5E-s166636--795feec7b7b39c8abb5e2aebfffec51d.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/anatomy3_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_3/sub-0025553/ses-1/mri/anatomy3_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g9/mq/MD5E-s117237--da8314cf57ef794bccbc5902f6d60447.nii.gz/MD5E-s117237--da8314cf57ef794bccbc5902f6d60447.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/anon_misub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/J7/MD5E-s4883895--1af5cec544ec81393d2738061d298650.nii.gz/MD5E-s4883895--1af5cec544ec81393d2738061d298650.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/anon_msub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/Kz/MD5E-s8849123--910a2065f571dc260bdf63b490903dff.nii.gz/MD5E-s8849123--910a2065f571dc260bdf63b490903dff.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/cat_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/ZX/MD5E-s87352--261dfbb976a580bf253ca1e3a8ae614e.nii.gz/MD5E-s87352--261dfbb976a580bf253ca1e3a8ae614e.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/cobra_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_3/sub-0025553/ses-1/mri/cobra_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/9f/MD5E-s40938--c75ee1adad0d4a4cc73e64cae09f84cc.nii.gz/MD5E-s40938--c75ee1adad0d4a4cc73e64cae09f84cc.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/hammers_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_3/sub-0025553/ses-1/mri/hammers_sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/ibsr_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_3/sub-0025553/ses-1/mri/ibsr_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wz/51/MD5E-s137427--ec74a236df233e0d4631aefcf94754dc.nii.gz/MD5E-s137427--ec74a236df233e0d4631aefcf94754dc.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/it_sub-0025553_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/6x/MD5E-s283--77c8ec62fb2830722a76d640fbe6c579.mat/MD5E-s283--77c8ec62fb2830722a76d640fbe6c579.mat

IPCAS_3/sub-0025553/ses-1/mri/it_sub-0025553_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/6J/MD5E-s282--ef3faeb1c92d67c235817f728b553951.mat/MD5E-s282--ef3faeb1c92d67c235817f728b553951.mat

IPCAS_3/sub-0025553/ses-1/mri/iy_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/GV/MD5E-s35297322--38627f0973361e7e906cc29e988970ed.nii.gz/MD5E-s35297322--38627f0973361e7e906cc29e988970ed.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/julichbrain_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025553/ses-1/mri/julichbrain_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/V5/MD5E-s175829--89566f46fc2dfee4201eb3028a12625a.nii.gz/MD5E-s175829--89566f46fc2dfee4201eb3028a12625a.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/lpba40_sub-0025553_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025553/ses-1/mri/lpba40_sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/m0wp1sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/m0wp2sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/V7/MD5E-s2304921--ea4c0e8a023821246faf500e0c7c4deb.nii.gz/MD5E-s2304921--ea4c0e8a023821246faf500e0c7c4deb.nii.gz

IPCAS_3/sub-0025553/ses-1/mri/m0wp3sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/mori_sub-0025553_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025553/ses-1/mri/mori_sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/mwp1sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025553/ses-1/mri/mwp2sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/mwp3sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/neuromorphometrics_sub-0025553_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025553/ses-1/mri/neuromorphometrics_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025553/ses-1/mri/p0sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/p1sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/p2sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/p3sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/rp1sub-0025553_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/rp2sub-0025553_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/rp3sub-0025553_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/t_sub-0025553_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025553/ses-1/mri/t_sub-0025553_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_3/sub-0025553/ses-1/mri/thalamus_sub-0025553_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025553/ses-1/mri/thalamus_sub-0025553_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025553/ses-1/mri/wj_sub-0025553_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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